| Record ID |
Name |
Trait(s) |
Donor organism |
Function |
|
101942
|
5-enolpyruvylshikimate-3-phosphate synthase
|
Resistance to herbicides - Glyphosate
|
Arthrobacter globiformis - Arthrobacter
|
The enzyme participates in biosynthesis of the aromatic amino acids phenylalanine, tyrosine and tryptophan. The enzyme is a target for herbicides as these amino acids are only synthesized in plants and microorganisms. Glyphosate acts as a competitive inhibitor for phosphoenolpyruvate, as substrate of EPSPS, and is used as a broad-spectrum systemic herbicide.
|
|
110487
|
Anthocyanin 3-aromatic acyltransferase gene promoter
|
|
Perilla frutescens - Perilla, Beefsteak mint, Chinese basil, Shiso-zoku, PERFR
|
|
|
109829
|
Flavonoid 3', 5' hydroxylase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration
|
Campanula medium - Canterbury bells, Cup-and-saucer, Bellflower, CAMME
|
Flavonoid-3', 5'-hydroxylase (F3'5'H) is the key enzyme in the synthesis of 3', 5'-hydroxylated anthocyanins, which are generally required for the expression of blue or purple flower color.
|
|
116036
|
Glutamate dehydrogenase mitochondrial transit peptide
|
|
Solanum lycopersicum - Tomato, SOLLC
|
|
|
100266
|
Legumin B4 gene promoter
|
|
Vicia faba - Broad Bean, Tick Bean, Windsor Bean, Horse Bean, Pigeon Bean, Field Bean
|
|
|
102165
|
Phytophthora infestans Resistance gene 3
|
Resistance to diseases and pests - Fungi
|
Solanum bulbocastaneum - Nightshade, Ornamental nightshade
|
The Resistance gene is a member of the NBS-LRR (Nucleotide Binding Site - Leucine Rich Repeat) class and codes for a protein that recognise specific proteins - termed elicitor proteins - of Phytophthora infestans the causing agent of late-blight disease. ...
|
|
102612
|
16S rRNA gene promoter
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
102615
|
16S rRNA gene promoter
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
116046
|
19-kDa zein gene terminator
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
110888
|
1-acyl-sn-glycerol-3-phosphate acyltransferase coding sequence
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Escherichia coli - ECOLX
|
Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the 2 position. This enzyme can utilize either acyl-CoA or acyl-ACP as the fatty acyl donor
|
|
110889
|
1-acyl-sn-glycerol-3-phosphate acyltransferase coding sequence
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Limnanthes douglasii - Douglas' meadowfoam , Poached egg plant, LIMDO
|
The lysophosphatidic acid acyltransferase gene from Limnanthes douglasii catalyses the linkage of erucic acid to the sn-2 position of lysophosphatidic acid.
Expression of LPAAT in the seeds of genetically modified oilseed rape leads to significantly increased levels of the trigyceride Trierucin.
|
|
110890
|
1-acyl-sn-glycerol-3-phosphate acyltransferase coding sequence
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the 2 position. This enzyme can utilize either acyl-CoA or acyl-ACP as the fatty acyl donor
|
|
15012
|
1-amino-cyclopropane -1-carboxylic acid synthase gene
|
Changes in physiology and/or production - Ripening
|
Dianthus caryophyllus - Carnation, DIACA
|
The ACC gene encodes for the carnation 1-amino-cyclopropane-1-carboxylic acid (ACC) synthase which is required for normal ethylene biosynthesis which affects the rate of ripening in plants.
|
|
15014
|
1-amino-cyclopropane -1-carboxylic acid synthase gene
|
Changes in physiology and/or production - Ripening
|
Solanum lycopersicum - Tomato, SOLLC
|
The ACC gene encodes a truncated copy of the tomato 1-amino-cyclopropane-1-carboxylic acid (ACC) synthase encoding gene in order to suppress expression of the endogenous unmodified gene (which is required for normal ethylene biosynthesis) through gene silencing.
|
|
15013
|
1-amino-cyclopropane-1-carboxylic acid deaminase
|
Changes in physiology and/or production - Ripening
|
Pseudomonas chlororaphis - PSECL
|
The ACCD gene encodes the enzyme ACCD. In the plant, this enzyme catalyzes metabolism of 1-amino-cyclopropane-1-arboxylic acid (ACC), an essential precursor for the biosynthesis of the plant hormone ethylene.
|
|
111938
|
1-aminocyclopropane-1-carboxylic acid synthase gene
|
Changes in physiology and/or production - Ripening
|
Ananas comosus - Pineapple, ANACO
|
1-aminocyclopropane-1-carboxylic acid synthase is involved in catalyzing the penultimate step in ethylene biosynthesis.
|
|
115829
|
27 kDa gamma-zein seed storage protein signal peptide
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
103622
|
27kD gamma-zein Promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
116051
|
27-kDA gamma zein terminator
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
111081
|
2-deoxyglucose-6-phosphate phosphatase gene
|
Selectable marker genes and reporter genes
|
Saccharomyces cerevisiae - Yeast, YEASX
|
In plant cells a glucose analog, 2-deoxyglucose (2-DOG), is phosphorylated by hexokinase to form 2-DOG-6-phosphate, which competes with glucose-6-phosphate causing cell death through the inhibition of glycolysis, protein synthesis, cell wall polysaccharide synthesis and also protein glycosylation. ...
|
|
104339
|
2xOCS:35S Promoter
|
|
|
|
|
114726
|
3' Noncoding region of Yellow fever virus
|
|
Yellow fever virus - YFV 17D
|
|
|
115844
|
3' untranslated region of fructose-bisphosphate aldolase
|
|
Setaria italica - Foxtail millet, Italian millet
|
|
|
115852
|
3' untranslated region of glycine-rich RNA binding-protein 3
|
|
Oryza sativa - Rice, ORYSA
|
|
|
114701
|
3' Untranslated region of Histone 4
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
115850
|
3' untranslated region of no apical meristem domain containing protein
|
|
Oryza sativa - Rice, ORYSA
|
|
|
15033
|
3"(9)-O-aminoglycoside adenyltransferase
|
Resistance to antibiotics - Streptomycin
|
Escherichia coli - ECOLX
|
The aadA gene confers resistance to aminoglycoside antibiotics such as spectinomycin and streptomycin. The enzyme adenylates either the 3’-hydroxy on the amino-hexose III ring of streptomycin or the 9-hydroxyl on the actinamine ring of spectinomycin Typically used as a marker gene.
|
|
109068
|
30S ribosomal protein S16 gene terminator
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
104793
|
4-Hydroxyphenylpyruvate dioxygenase gene
|
Resistance to herbicides
|
Pseudomonas fluorescens - PSEFL
|
4-hydroxyphenylpyruvate dioxygenase (HPPD) catalyses the conversion of 4-hydroxyphenylpyruvate to homogentisate which is the aromatic precursor of tocopherol and plastoquinone, which are essential to the photosynthetic transport chain and antioxidative systems. This reaction involves decarboxylation, substituent migration and aromatic oxygenation in a single catalytic cycle. ...
|
|
103900
|
4ocs∆Mas2’ promoter
|
|
|
|
|
114711
|
5' Noncoding region of Yellow fever virus
|
|
Yellow fever virus - YFV 17D
|
|
|
114677
|
5' region of Outer Envelope Protein 7
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
100354
|
5' untranslated leader from chlorophyll a/b-binding protein
|
|
Triticum aestivum - Wheat
|
|
|
103886
|
5' Untranslated Leader of AMV RNA4
|
|
Alfalfa mosaic virus - Alfalfa mosaic virus, AMV
|
|
|
101901
|
5' untranslated leader of chlorophyll a/b-binding protein
|
|
Petunia hybrida - Petunia, PETHY
|
|
|
114700
|
5' Untranslated region from Barley Stripe Mosaic Virus
|
|
Barley stripe mosaic virus - Barley stripe mosaic hordeivirus; Barley false stripe virus; Barley mosaic virus; Barley mild stripe virus; Oat stripe mosaic virus
|
|
|
114698
|
5' Untranslated region from Cucumber Mosaic Virus 1
|
|
Cucumber mosaic virus - CMV
|
|
|
114699
|
5' Untranslated region from Potato Virus X
|
|
Potato virus X - PVX
|
|
|
115261
|
5' Untranslated region of At1g01170
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115347
|
5' untranslated region of At1g65090
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115270
|
5' Untranslated region of At5g63190
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115355
|
5' untranslated region of α-globulin B
|
|
Gossypium hirsutum - Cotton
|
|
|
101026
|
5’e1 promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
103911
|
5126 anther-specific promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
104947
|
5'e1 Leader
|
|
Oryza sativa - Rice, ORYSA
|
|
|
46333
|
5-enolpyruvylshikimate-3-phosphate synthase
|
Resistance to herbicides - Glyphosate
|
Zea mays - Maize, Corn, MAIZE
|
The enzyme participates in biosynthesis of the aromatic amino acids phenylalanine, tyrosine and tryptophan. The enzyme is a target for herbicides as these amino acids are only synthesized in plants and microorganisms. Glyphosate acts as a competitive inhibitor for phosphoenolpyruvate, as substrate of EPSPS, and is used as a broad-spectrum systemic herbicide.
|
|
45463
|
5-enolpyruvylshikimate-3-phosphate synthase
|
Resistance to herbicides - Glyphosate
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
The enzyme participates in biosynthesis of the aromatic amino acids phenylalanine, tyrosine and tryptophan. The enzyme is a target for herbicides as these amino acids are only synthesized in plants and microorganisms. Glyphosate acts as a competitive inhibitor for phosphoenolpyruvate, as substrate of EPSPS, and is used as a broad-spectrum systemic herbicide.
|
|
45913
|
5-enolpyruvylshikimate-3-phosphate synthase
|
Resistance to herbicides - Glyphosate
|
Escherichia coli - ECOLX
|
Involved in EPSP biosynthesis. The aroA gene, which encodes 5-enolpyruvylshikimate-3-phosphate synthase , an enzyme of the common aromatic biosynthetic pathway, the enzyme participates in biosynthesis of the aromatic amino acids phenylalanine, tyrosine and tryptophan. ...
|
|
14979
|
5-enolpyruvylshikimate-3-phosphate synthase gene
|
Resistance to herbicides - Glyphosate
|
Agrobacterium tumefaciens - Agrobacterium
|
The cp4 epsps gene was isolated from the CP4 strain of the common soil bacterium [i]Agrobacterium tumefaciens[/i]. The enzyme encoded by the sequence is a version of EPSPS that is highly tolerant to inhibition by glyphosate and therefore leads to increased tolerance to glyphosate-containing herbicides. The following reaction is catalyzed by EPSPS: ...
|
|
105184
|
5-enolpyruvylshikimate-3-phosphate synthase gene
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Salmonella typhimurium - SALTM
|
Involved in EPSP biosynthesis. The aroA gene, which encodes 5-enolpyruvylshikimate-3-phosphate synthase , an enzyme of the common aromatic biosynthetic pathway, the enzyme participates in biosynthesis of the aromatic amino acids phenylalanine, tyrosine and tryptophan.
|
|
106246
|
5-enolpyruvylshikimate-3-phosphate synthase gene
|
Resistance to herbicides - Glyphosate
|
Dickeya dadantii - DICDA
|
Involved in EPSP biosynthesis. The aroA gene, which encodes 5-enolpyruvylshikimate-3-phosphate synthase , an enzyme of the common aromatic biosynthetic pathway, the enzyme participates in biosynthesis of the aromatic amino acids phenylalanine, tyrosine and tryptophan. ...
|
|
103857
|
5-enolpyruvylshikimate-3-phosphate synthase Leader
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
46121
|
7Crp gene
|
Changes in quality and/or metabolite content - Allergens
|
Cryptomeria japonica - Japanese cedar
|
7Crp gene derived from cedar pollen Cryj I and Cryj II allergen protein genes. This gene encodes an artificial peptide linking seven-site sequences recognized by the human cedar allergen-specific T cells.
|
|
104598
|
AC1 Gene
|
|
Bean golden mosaic virus - BGMV
|
AC1 encodes a complex, multifunctional protein (Rep) that acts as a rolling-circle replication initiation factor, which is the only protein strictly essential for viral genome replication in the bean yellow mosaic virus and is capable of regulating its own expression.
|
|
110265
|
Acetohydroxy acid synthase 1 gene
|
Resistance to herbicides - Imidazolinone, Sulfonylurea
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
AHAS is an essential enzyme for many organisms as it catalyzes the first step in the biosynthesis of the branched-chain amino acids valine, isoleucine, and leucine.
|
|
110264
|
Acetohydroxy acid synthase 1 gene promoter
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
110266
|
Acetohydroxy acid synthase 1 gene terminator
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
110260
|
Acetohydroxy acid synthase 3 gene
|
Resistance to herbicides - Imidazolinone, Sulfonylurea
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
AHAS is an essential enzyme for many organisms as it catalyzes the first step in the biosynthesis of the branched-chain amino acids valine, isoleucine, and leucine.
|
|
110261
|
Acetohydroxy acid synthase 3 gene Promoter
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
110262
|
Acetohydroxy acid synthase 3 gene terminator
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
15177
|
Acetohydroxy acid synthase gene
|
Resistance to herbicides - Chlorsulfuron, Sulfonylurea
|
Nicotiana tabacum - Tobacco, TOBAC
|
Acetolactate synthase (ALS) catalyzes the first common step in the biosynthesis of the essential amino acids isoleucine, leucine, and valine.
Native ALS is normally inhibited by sulfonylurea herbicides. However a naturally occurring mutation causes the production of an altered form of ALS (designated SuRB) that is insensitive to inhibition by sulfonylurea herbicides.
|
|
48073
|
Acetohydroxy acid synthase gene
|
Resistance to herbicides - Imidazolinone, Sulfonylurea
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
AHAS is an essential enzyme for many organisms as it catalyzes the first step in the biosynthesis of the branched-chain amino acids valine, isoleucine, and leucine.
A common mutant form of the ahas gene was isolated from a herbicide-resistant Arabidopsis thaliana which differs from the wild type gene by only a single base pair. ...
|
|
100268
|
Acetohydroxy acid synthase gene
|
Resistance to herbicides - Sulfonylurea
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
Acetohydroxy acid synthase (also known as acetolactate synthase) is a key enzyme that catalyzes the first common step in the biosynthesis of the essential branched-chain amino acids isoleucine, leucine, and valine ...
|
|
104877
|
Acetohydroxy acid synthase gene
|
Resistance to herbicides - Sulfonylurea
|
Oryza sativa - Rice, ORYSA
|
AHAS is an essential enzyme for many organisms as it catalyzes the first step in the biosynthesis of the branched-chain amino acids valine, isoleucine, and leucine.
A common mutant form of the ahas gene which differs from the wild type gene by two mutations W548L and S627I results in an enzyme that has tolerance to sulfonylurea herbicides in plants. The ahas mutant isoform may, therefore, be used as a selectable marker in transgenic plants.
|
|
15164
|
Acetohydroxy acid synthase gene (Chimeric)
|
Resistance to herbicides - Sulfonylurea
|
Nicotiana tabacum - Tobacco, TOBAC
|
Acetolactate synthase (ALS) catalyzes the first common step in the biosynthesis of the essential amino acids isoleucine, leucine, and valine.
Native ALS is normally inhibited by sulfonylurea herbicides. However S4-HrA is a chimeric gene derived from two different tobacco ALS genes that both encoded herbicide sensitive versions of ALS.
Two resistance mutations were introduced into one of the ALS genes (Pro191Ala and Trp568Leu) via site directed mutagenesis. ...
|
|
103932
|
Acetohydroxy acid synthase gene promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
104876
|
Acetohydroxy acid synthase gene Promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
100390
|
Acetohydroxy acid synthase gene terminator
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
103933
|
Acetohydroxy acid synthase gene terminator
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
104878
|
Acetohydroxy acid synthase gene Terminator
|
|
Oryza sativa - Rice, ORYSA
|
|
|
103896
|
Acetohydroxy acid Synthase gene Terminator
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
104672
|
Acetohydroxy acid synthase promoter
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
48364
|
Acetohydroxyacid synthase gene
|
Resistance to herbicides - Sulfonylurea
|
Zea mays - Maize, Corn, MAIZE
|
The acetolactate synthase enzyme (ALS) plays a key role in the biochemical pathways of the branched-chain amino acids leucine, isoleucine and valine. The application of ALS-inhibiting herbicides blocks this synthesis pathway. Lack of the aforementioned amino acids interferes with protein synthesis, causing the plant to die off.This gene encodes a modified acetolactate synthase, which confers tolerance to several acetolactate synthase-inhibiting herbicides such as, for example, sulfonylurea.
|
|
103926
|
Acetohydroxyacid synthase gene promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
102613
|
Acetyl-CoA carboxylase large subunit
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
ACC catalyzes the irreversible carboxylation of acetyl-CoA to malonyl-CoA. Malonyl-CoA is needed as a co-substrate in the fatty acids biosynthesis.
|
|
104517
|
Actin 2 Gene Promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115757
|
Actin 2 terminator
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
103761
|
Actin 5c gene Promotor
|
|
Drosophila melanogaster - Common Fruit Fly
|
|
|
103909
|
Actin 8 Intron 1
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
103908
|
Actin 8 Leader sequence
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
103907
|
Actin 8 Promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
110891
|
Acyl-(ACP) thioesterase type B gene
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Cuphea lanceolata - Cigar Flower
|
Catalysis of the reaction: RCO-SR' + H2O = RCOOH + HSR'. This reaction is the hydrolysis of a thiolester bond, an ester formed from a carboxylic acid and a thiol (i.e., RCO-SR'), such as that found in acetyl-coenzyme A.
|
|
110892
|
Acyl-(ACP) thioesterase type B promoter
|
|
Cuphea lanceolata - Cigar Flower
|
|
|
110893
|
Acyl-(ACP) thioesterase type B terminator
|
|
Cuphea lanceolata - Cigar Flower
|
|
|
101362
|
Acyl-acyl carrier protein thioesterase ClFatB4
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Cuphea lanceolata - Cigar Flower
|
Acyl-acyl carrier protein (Acyl-ACP) thioesterases (TE) hydrolyse the thioester ligation between the ACP (acyl carrier protein) and the synthesised acyl chain in fatty acid biosynthesis. Myristic and palmitic-[ACP] are substrates of the Cuphea lanceolata-derived enzyme which is encoded by the acyl-[ACP] thioesterase gene (ClFatB4). ...
|
|
103920
|
Acyl-acyl carrier protein thioesterase promoter
|
|
Cuphea lanceolata - Cigar Flower
|
|
|
103921
|
Acyl-acyl carrier protein thioesterase Terminator
|
|
Cuphea lanceolata - Cigar Flower
|
|
|
115338
|
Acyl-homoserine lactonase CHB37
|
Resistance to diseases and pests - Bacteria
Resistance to Gram-negative bacteria
|
Bacillus cereus CHB37
|
The enzyme hydrolyzes N-acyl-homoserine lactones (AHLs) molecules secreted by Gram-negative bacteria, such as [i]Erwinia mallotivora[/i]. AHLs have been determined to be the principle signalling molecule involved in quorum sensing (cell-to-cell communication) in Gram-negative bacteria and are essential for survival and regulation of virulence genes. Bacteria lacking AHLs are non-pathogenic.
|
|
115339
|
Acyl-homoserine lactonase SP24
|
Resistance to diseases and pests - Bacteria
Resistance to Gram-negative bacteria
|
Bacillus thuringiensis - Bt, Bacillus, BACTU
|
The enzyme hydrolyzes N-acyl-homoserine lactones (AHLs) molecules secreted by Gram-negative bacteria, such as [i]Erwinia mallotivora[/i]. AHLs have been determined to be the principle signalling molecule involved in quorum sensing (cell-to-cell communication) in Gram-negative bacteria and are essential for survival and regulation of virulence genes. Bacteria lacking AHLs are non-pathogenic.
|
|
115649
|
Acyl-lipid (7-3)-desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Pavlova lutheri
|
Acyl-lipid (7-3)-desaturase creates a double bond at the fourth position from the carboxyl end of docosapentaenoic acid (C22:5n-3), converting it into docosahexaenoic acid (C22:6n-3). The enzyme can additionally catalyze the conversion of 22:4n-6 into 22:5n-6 .
|
|
110931
|
Acyl-lipid ∆12-desaturase coding sequence
|
Resistance to diseases and pests - Fungi
Tolerance to abiotic stress - Cold / Heat
|
Synechocystis sp. - Cyanobacteria, SYNYX
|
Acyl-lipid desaturases introduce double bonds into fatty acid moieties that have been esterified to glycerolipids, which are located in the endoplasmic reticulum, the chloroplast membrane in plant cells and the thylakoid membrane in cyanobacterial cells. This type desaturase is the most efficient regulator of the unsaturation level of membrane lipids in response to temperature change ...
|
|
111572
|
Adenylate kinase gene
|
Changes in physiology and/or production - Yield
|
Solanum tuberosum - Potato, SOLTU
|
Adenylate kinases catalyzes the reversible transfer of a phosphate group from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) to yield adenosine diphosphates (ADP). Therefore the enzyme is essential for homeostasis of adenosine phosphates - maintaining the energetic equilibrium of the organism.
|
|
106420
|
ADP glucose pyrophosphorylase gene promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
109218
|
ADP glucose pyrophosphorylase gene terminator
|
|
Oryza sativa - Rice, ORYSA
|
|
|
104660
|
AHAS Chloroplast Transit Peptide
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
115846
|
Albino and pale green 6 target sequence
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
104337
|
Alcohol Dehydrogenase 1, intron 1
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
103867
|
Alcohol Dehydrogenase 1, intron 2
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
103625
|
Alcohol Dehydrogenase 1, intron 6
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
110414
|
Alcohol dehydrogenase 5′UTR
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
104870
|
Alcohol dehydrogenase gene 5'UTR
|
|
Oryza sativa - Rice, ORYSA
|
|
|
111202
|
Alcohol dehydrogenase I promoter
|
|
Aspergillus nidulans - EMEND
|
|
|
115247
|
Alcohol dehydrogenase intron
|
|
Drosophila melanogaster - Common Fruit Fly
|
|
|
106441
|
Alcohol oxidase 1 gene promoter
|
|
Pichia pastoris - Yeast, PICPA
|
|
|
106442
|
Alcohol oxidase 1 gene terminator
|
|
Pichia pastoris - Yeast, PICPA
|
|
|
111201
|
alcR transactivator gene
|
Transcription regulation
|
Aspergillus nidulans - EMEND
|
The alcR gene of Aspergillus nidulans encodes a protein with a zinc finger motif, the AlcR activator protein/ AlcR transactivator. In the presence of ethanol, AlcR specifically binds DNA motifs of the ethanol regulon of A.nidulans, inducing the expression of the genes of this regulon. This ethanol pathway is a highly inducible gene system, the so-called alc system, responsible for the utilization of ethanol as sole source of carbon in A.nidulans.
|
|
111593
|
Alkaline phosphatase transit peptide
|
|
Escherichia coli - ECOLX
|
|
|
116048
|
All-stop codon sequence
|
|
|
|
|
108877
|
Alpha Tubulin Gene promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
108880
|
Alpha Tubulin Gene terminator
|
|
Oryza sativa - Rice, ORYSA
|
|
|
112606
|
Alpha-amylase 3 gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
Manihot esculenta - Cassava, Brazilian arrowroot, Yuca, Manioc, Mandioca, MANES
|
The plastidial alpha amylase gene (AMY3) is involved in the release of branched malto‐olicosaccharides from the starch granule.
|
|
109359
|
Alpha-amylase gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
Bacillus licheniformis - BACLI
|
Alpha–amylase helps to degrade starch by hydrolysing the alpha-1,4-glycosidic bonds of oligo- and polysaccharides. Besides in bacteria, it is also found in fungi, higher plants and animals. Amylase is commonly used in the fermentation and baking industry. The transferred alpha–amylase from B. licheniformis is characterised by high heat resistance and a broad pH optimum.
|
|
104334
|
Alpha-amylase gene promoter
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
111543
|
Alpha-amylase signal peptide
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
106425
|
Alpha-glucan water dikinase R1 gene promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
46091
|
Alpha-hordothionine gene
|
Resistance to diseases and pests - Fungi
|
Hordeum vulgare - Barley, HORVU
|
Thionins are a class of small(45– 47 amino acids), anti fungal, highly basic, cysteine-rich proteins. An in vitro type-1 α-HTH treatment of Neurospora crassa hyphae resulted in increased calcium ion uptake and permeabilization of the fungal membrane, leading to rupture.
|
|
48368
|
Amino acid permease 1 gene
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Vicia faba - Broad Bean, Tick Bean, Windsor Bean, Horse Bean, Pigeon Bean, Field Bean
|
The Vfaap1 gene from Vicia faba encodes an amino acid permease. Amino acid permeases transport amino acids from the plant vascular tissue into the symplasts of plant cells. They are differentially expressed according to plant development and tissue, and exhibit a range of specificity patterns for amino acids. ...
|
|
111203
|
Amino acid permease 1 gene
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Solanum tuberosum - Potato, SOLTU
|
AAP1 in involved in the long-distance transport of amino acids from leaves to tubers.
A reduced expression of CS-aap1-SOLTU in the source leaves of transgenic potatoes leads to a reduction of the amino acid content in the tubers.
|
|
103860
|
Amino acid permease 1 Terminator
|
|
Vicia faba - Broad Bean, Tick Bean, Windsor Bean, Horse Bean, Pigeon Bean, Field Bean
|
|
|
111295
|
Amino acid permease 2 gene
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Solanum tuberosum - Potato, SOLTU
|
AAP2 is thought to be involved in the long-distance transport of amino acids from leaves to tubers.
|
|
104887
|
Aminocyclopropanecarboxylate oxidase gene
|
Changes in physiology and/or production - Ripening
|
Carica papaya - Papaya, Pawpaw, Papaw, CARPA
|
ACO2, encoding for the ACC oxidase enzyme, plays an important role in ethylene biosynthesis pathway. It oxidises 1-aminocyclopropane-1-carboxylate in the presence of ascorbate and oxygen to produce ethylene gas which has a role in the fruit ripening process.
|
|
14967
|
Aminoglycoside 3 phosphotransferase II
|
Resistance to antibiotics - Kanamycin
Selectable marker genes and reporter genes
|
Escherichia coli - ECOLX
|
The aphII gene confers resistance to the antibiotic kanamycin. Typically used as a marker gene.
|
|
14966
|
amy797E alpha amylase
|
Thermostable alpha-amylase
Use in industrial applications - Biofuel production
|
Thermococcales spp. - Thermococcus
|
The amy797E gene encodes a thermostable alpha-amylase. Alpha-amylases catalyse the hydrolysis of starch by cleaving the internal alpha-1,4-glucosidic bonds of starch into dextrins, maltose and glucose (saccharification). Splitting starch into sugar is the first step in producing bioethanol from plants. Plants like maize naturally contain their own amylases. They get destroyed, however, when maize is subjected to high temperatures for ethanol production. ...
|
|
114712
|
Anchored core protein C
|
|
Yellow fever virus - YFV 17D
|
Anchored protein C (ancC) binds the host cell membrane and gathers the viral RNA genome to form the core of the mature viral particles. During viral entry into the host cell, the protein may induce genome penetration into host cytoplasm. Furthermore, ancC can migrate to the nucleus to modulate host functions. ...
|
|
105427
|
Anthocyanidin synthase gene promoter
|
|
Dianthus caryophyllus - Carnation, DIACA
|
|
|
105424
|
Anthocyanidin synthase gene terminator
|
|
Dianthus caryophyllus - Carnation, DIACA
|
|
|
110411
|
Anthocyanin 3-aromatic acyltransferase gene terminator
|
|
Perilla frutescens - Perilla, Beefsteak mint, Chinese basil, Shiso-zoku, PERFR
|
|
|
43794
|
Anthocyanin 5-acyltransferase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration
|
Torenia sp. - Torenia hybrid, Wishbone flowers, Blue Wings, TOREN
|
Anthocyanin 5-acyltransferase is an enzyme of the phenylpropanoid pathway that alters the production of a type of anthocyanin called delphinidin.
|
|
105436
|
Anthocyanin-3',5'-methyltransferase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Torenia sp. - Torenia hybrid, Wishbone flowers, Blue Wings, TOREN
|
Anthocyanin-3',5'-methyltransferase (AMT) methylates delphinidin-3-glucoside to produce petunidin-3-glucoside and malvidin-3-glucoside.
|
|
104722
|
Antifreeze Polypeptide Promoter
|
|
Zoarces americanus - Ocean pout, Poodler, Mother-of-eels, Muttonfish, North-Atlantic ocean pout, ZOAAM
|
|
|
104724
|
Antifreeze Polypeptide Terminator
|
|
Oncorhynchus tshawytscha - Chinook Salmon, King Salmon, ONCTS
|
|
|
48365
|
Apyrase-gene
|
Other growth, development and product quality
|
Solanum tuberosum - Potato, SOLTU
|
Apyrases are enzymes that transform NTP (nucleoside triphosphates) via NDP to NMP without triggering an endergonic reaction in the process. These enzymes have been identified in the tissues of animals, plants (among others in Arabidopsis thaliana, legumes and potatoes) and fungi and apparently have predominantly regulatory functions. ...
|
|
114695
|
Arabidopsis thaliana and Nicotiania tabacum chimeric Rubisco activase
|
Changes in physiology and/or production - Yield, Growth rate
Increased photosynthetic rate
Tolerance to abiotic stress - Cold / Heat
|
Nicotiana tabacum - Tobacco, TOBAC
|
Ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubsico) activase (RCase) facilitates activation of and the maintenance of Rubisco activity by using ATP hydrolysis to release tightly bound sugar phosphates from the catalytic sites of Rubisco. ...
|
|
115644
|
Arcelin-5 promoter
|
|
Phaseolus vulgaris - String bean, French bean, Kidney bean, Common Bean , PHAVU
|
|
|
115646
|
Arcelin-5 terminator
|
|
Phaseolus vulgaris - String bean, French bean, Kidney bean, Common Bean , PHAVU
|
|
|
115648
|
Argonaute 4 intron
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
104941
|
ArsR binding site
|
|
Escherichia coli - ECOLX
|
|
|
104939
|
ArsR gene
|
Tolerance to abiotic stress
|
Escherichia coli - ECOLX
|
The gene arsR stems from the E. coli-specific plasmid R773 and encodes for a transcriptional regulator with binding sites for arsenic compounds.
It is a repressor protein that binds to its promoter in the absence of arsenic compounds therefore repressing the expression of downstream genes.
Arsenic compounds that are taken up by bacterial cells form a complex with ArsR, thereby allosterically preventing the association of ArsR with the promoter. ...
|
|
104940
|
ArsR Promoter
|
|
Escherichia coli - ECOLX
|
|
|
104805
|
Aryloxyalkanoate dioxygenase gene
|
Resistance to herbicides
|
Delftia acidovorans - DELAC
|
The AAD-12 protein is an enzyme with an alpha ketoglutarate-dependent dioxygenase activity which results in metabolic inactivation of the herbicides of the aryloxyalkanoate family.
|
|
104812
|
Aryloxyalkanoate dioxygenase gene
|
Resistance to herbicides
Tolerance to 2,4-Dichlorophenoxyacetic acid
Tolerance to aryloxyphenoxypropionate
|
Sphingobium herbicidovorans - SPHHE
|
The aryloxyalkanoate dioxygenase (AAD-1) enzyme is able to degrade the herbicide 2,4-dichlorophenoxyacetate (2,4-D) and aryloxyphenoxypropionates (AOPP) herbicides, in an alpha.-ketoglutarate-dependent, enantiospecific manner.
|
|
106421
|
Asparagine synthetase-1 gene
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Solanum tuberosum - Potato, SOLTU
|
Asparagine synthetase is an enzyme that generates asparagine from aspartate.
|
|
115631
|
At1g62290 locus intron
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115117
|
ATM protein kinase
|
Impaired DNA repair mechanisms
Sensitivity to DNA damaging agents
|
Zea mays - Maize, Corn, MAIZE
|
ATAXIA-TELANGIECTASIA MUTATED (ATM) is a serine/threonine protein kinase that catalyzes the addition of a phosphate group to serine or threonine residues and is activated upon perception of genotoxic stresses (e.g. ionizing radiation). ATM primarily responds to double stranded DNA breaks. The kinase phosphorylates histone variant H2AX to form H2AXS139ph at double strand breaks. The protein becomes activated in response to stress-induced damage in somatic cells and DNA damage during meiosis. ...
|
|
114702
|
ATPase terminator
|
|
Solanum lycopersicum - Tomato, SOLLC
|
|
|
115116
|
ATR serine/threonine kinase
|
Impaired DNA repair
Sensitivity to DNA damaging agents
|
Zea mays - Maize, Corn, MAIZE
|
Serine/threonine-protein kinase ATR (ATR) catalyzes the addition of a phosphorate to serine or threonine residues. The protein plays a central role in cell-cycle regulation at the G2 phase checkpoint in response to single stranded DNA, DNA damage, and/or a replication block, but is not required for G2-arrest. This protein functions by transmitting DNA damage signals to downstream effectors of cell-cycle progression. ...
|
|
108282
|
Atrial natriuretic factor coding sequence
|
Production of medical or pharmaceutical compounds (human or animal)
|
Homo sapiens - HUMAN
|
Atrial natriuretic factor (ANF) is a powerful vasodilator, and a protein hormone secreted by heart muscle cells. It is involved in the homeostatic control of body water, sodium, potassium and fat (adipose tissue). It is released by muscle cells in the upper chambers (atria) of the heart (atrial myocytes) in response to high blood volume. ANP acts to reduce the water, sodium and adipose loads on the circulatory system, thereby reducing blood pressure.
|
|
103358
|
AttB λ attachment site
|
|
Escherichia coli - ECOLX
|
|
|
105608
|
avhppd-03 gene
|
Resistance to herbicides
|
Avena sativa - Oat, AVESA
|
The gene avhppd-03 decodes the enzyme AvHPPD-03 which catalyses the formation of homogentisic acid, the aromatic precursor of plastoquinone and vitamin E biosynthesis . It has a low binding afinity for mesotrione, a herbicide that inhibits HHPD. Expression of AvHPPD-03 in plant cells confers tolerance to HPPD inhibitor herbicides such as mesotrione.
|
|
100273
|
B33 gene promotor
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
116056
|
Banana streak virus (Acuminata Yunnan) promoter
|
|
Banana streak virus Acuminata Yunnan - BSV(AY)
|
|
|
114546
|
Barley Phytase
|
Changes in quality and/or metabolite content - Protein and amino acids, Vitamins
|
Hordeum vulgare - Barley, HORVU
|
Phytases are phosphatases that hydrolyze of phytic acid, an important phosphorous storage compound in plant seeds. Their activity thus ensures the bioavailability of phosphorous during germination, grain development, and maturation.
|
|
114547
|
Barley Phytase Promoter
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
114549
|
Barley Phytase Terminator
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
14973
|
Barnase
|
Changes in physiology and/or production - Reproduction - Male sterility
|
Bacillus amyloliquefaciens - BACAM
|
Barnase is a bacterial protein that has ribonuclease activity. It is lethal to the cell when expressed without its inhibitor barstar. The inhibitor binds to and occludes the ribonuclease active site, preventing barnase from damaging the cell's RNA after it has been synthesized but before it has been secreted. ...
|
|
104825
|
Barnase 3' Untranslated region
|
|
Bacillus amyloliquefaciens - BACAM
|
|
|
14974
|
Barstar
|
Changes in physiology and/or production - Fertility restoration
|
Bacillus amyloliquefaciens - BACAM
|
The barstar gene from [i]Bacillus amyloliquefaciens[/i] encodes a specific ribonuclease inhibitor (barstar enzyme) expressed only in the tapetum cells of the pollen sac during anther development. ...
|
|
101409
|
Barstar gene terminator
|
|
Bacillus amyloliquefaciens - BACAM
|
|
|
105599
|
B-BOX32 gene
|
Changes in physiology and/or production - Photoperiod response
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
BBX32 functions downstream of multiple photoreceptors as a modulator of light responses and functions in light sensitive hypocotyl growth.
|
|
108898
|
Beta-1,3-1,4-glucanase gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
|
This thermostable Beta-1,3-1,4-glucanase is the chimeric product resulting from the recombination of two Beta-1,3-1,4-glucanase from [i]Bacillus amyloliquefaciens[/i] and [i]Bacillus macerans[/i].
The resulting protein depolymerises glucans in the aleurone layer and the endosperm during caryopsis germination.
|
|
111746
|
Beta-1,3-glucanase 2 gene
|
Resistance to diseases and pests - Fungi
|
Hordeum vulgare - Barley, HORVU
|
Beta-1,3-glucanases catalyse the hydrolysis of beta-1,3-glucan, which is a linear homopolymer of beta-1,3 glycosidically bound glucose residues. Together with chitinases, the beta-1,3-glucanase is part of the plant defence system to protect itself from pathogenic fungal infections.
|
|
105217
|
Beta-actin gene promoter
|
|
Gallus gallus - Chicken, CHICK
|
|
|
108044
|
Beta-casein gene promoter
|
|
Capra aegagrus hircus - Domestic goat, Goat, CAPHI
|
|
|
45875
|
Beta-galactosidase gene
|
Selectable marker genes and reporter genes
|
Escherichia coli - ECOLX
|
β-galactosidase is a hydrolase enzyme that catalyzes the hydrolysis of β-galactosides into monosaccharides. Substrates of different β-galactosidases include ganglioside GM1, lactosylceramides, lactose, and various glycoproteins. ...
|
|
108700
|
Beta-glucosidase gene promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
46004
|
Beta-glucuronidase coding sequence
|
Selectable marker genes and reporter genes
|
Escherichia coli - ECOLX
|
The [i]uidA[/i] gene expresses beta-glucuronidase (GUS). Expression of this enzyme allows detection in the laboratory of transformed cells by using a simple colour change assay. Typically used as a reporter gene or visual marker gene.
|
|
108284
|
Beta-Glucuronidase coding sequence
|
Selectable marker genes and reporter genes
|
Streptococcus pneumoniae - Pneumococcus, STREE
|
Glucuronidase is a member of the glycosidase family of enzymes that catalyze breakdown of complex carbohydrates.
Expression of this enzyme allows detection in the laboratory of transformed cells by using a simple colour change assay. Typically used as a reporter gene or visual marker gene.
|
|
103614
|
Beta-kafirin promoter
|
|
Sorghum bicolor - Sorghum
|
|
|
103615
|
Beta-kafirin Terminator
|
|
Sorghum bicolor - Sorghum
|
|
|
110894
|
Beta-ketoacyl-CoA synthase gene
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
In the biosynthesis of fatty acids, the beta-ketoacyl-acyl carrier protein (ACP) synthases catalyze chain elongation by the addition of two-carbon units derived from malonyl-ACP to an acyl group bound to either ACP or CoA.
|
|
14975
|
Beta-lactamase gene
|
Resistance to antibiotics - Ampicillin
|
Escherichia coli - ECOLX
|
Beta-lactamases are enzymes produced by some bacteria and are responsible for their resistance to beta-lactam antibiotics like penicillins, cephamycins, and carbapenems (ertapenem) (Cephalosporins are relatively resistant to beta-lactamase).
These antibiotics have a common element in their molecular structure: a four-atom ring known as a beta-lactam. The lactamase enzyme breaks that ring open, deactivating the molecule's antibacterial properties
|
|
114963
|
Beta-lactamase promoter
|
|
Escherichia coli - ECOLX
|
|
|
114964
|
Beta-lactamase terminator
|
|
Escherichia coli - ECOLX
|
|
|
115356
|
bleomycin binding protein
|
Resistance to antibiotics
Resistance to bleomycin
|
Escherichia coli - ECOLX
|
The protein has a high-binding affinity for bleomycin, thus has the ability to sequester bleomycin and confer resistance.
|
|
110730
|
BNYVV coat protein
|
Resistance to diseases and pests - Viruses - Beet necrotic yellow virus (BNYV)
|
Beet necrotic yellow vein virus - BNYVV
|
RNA2 of the Beet Necrotic Yellow Vein Virus (BNYVV) carries the information for the viral coat protein, an important domain for encapsidation, vector transmissibility and cell-to-cell transmission.
|
|
115580
|
Bovine growth hormone terminator
|
|
Bos taurus - Cow, Cattle, Bull, Auroch, Oxen, Bullocks
|
|
|
48366
|
Branching Enzyme 1
|
altered carbohydrate composition: increased amylopectin content
|
Solanum tuberosum - Potato, SOLTU
|
The be1 and be2 genes code for starch branching enzymes which catalyse the splitting of alpha-1,4-glucans and the subsequent formation of alpha-1,6-glycosidic bonds between glucan chains during amylopectin synthesis.
The isozymes BE1 and BE2 differ with regard to their amino acid sequences, their expression patter (BE1 is expressed mainly in potato tubers, BE2 mainly in leaves) and their specificity (e.g. size of the transferred carbohydrate chains).
|
|
48453
|
Branching Enzyme 2
|
altered carbohydrate composition: increased amylopectin content
|
Solanum tuberosum - Potato, SOLTU
|
The be1 and be2 genes code for starch branching enzymes which catalyse the splitting of alpha-1,4-glucans and the subsequent formation of alpha-1,6-glycosidic bonds between glucan chains during amylopectin synthesis.
The isozymes BE1 and BE2 differ with regard to their amino acid sequences, their expression patter (BE1 is expressed mainly in potato tubers, BE2 mainly in leaves) and their specificity (e.g. size of the transferred carbohydrate chains).
|
|
105056
|
Brittle-1 gene Transit Peptide
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
111931
|
Bromelain inhibitor gene promoter
|
|
Ananas comosus - Pineapple, ANACO
|
|
|
14976
|
Bromoxynil-specific nitrilase
|
Resistance to herbicides - Bromoxynil
|
Klebsiella pneumoniae subsp. ozaenae - Klebsiella, KLEPO
|
A Klebsiella ozaenae nitrilase converts the herbicide bromoxynil (3,5-dibromo-4 hydroxybenzo-nitrile) to 3,6-dibromo-4-hydroxybenzoic acid to adegraded non-herbicidal product.
|
|
103892
|
C5 left flanking arm
|
|
Canarypox virus - CNPV
|
|
|
103891
|
C5 right flanking arm
|
|
Canarypox virus - CNPV
|
|
|
101413
|
CA55 gene promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
105596
|
Caffeoyl CoA 3-O-methyltransferase gene
|
Changes in quality and/or metabolite content - Lignin
|
Medicago sativa - Alfalfa, Lucerne, MEDSV
|
Alfalfa CCOMT catalyzes O-methylation of caffeoyl and 5-hydroxyferuloyl CoA, with preference for caffeoyl CoA.
|
|
101405
|
Calcium-dependent protein kinase promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
105197
|
CaMV 35S Enhancer
|
|
Cauliflower mosaic virus - CaMV
|
|
|
100287
|
CaMV 35S promoter
|
|
Cauliflower mosaic virus - CaMV
|
|
|
101504
|
CaMV 35S promoter plus four repeats of activating sequence
|
|
Cauliflower mosaic virus - CaMV
|
|
|
100290
|
CaMV 35S terminator
|
|
Cauliflower mosaic virus - CaMV
|
|
|
100366
|
CaMV Enhanced 35S promoter
|
|
Cauliflower mosaic virus - CaMV
|
|
|
115619
|
Capsid protein
|
|
African cassava mosaic virus - ACMV
|
|
|
114274
|
Catalase 1 intron
|
|
Ricinus communis - Castor bean
|
|
|
115350
|
Cathepsin D inhibitor terminator
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
105019
|
cctra intron
|
|
Ceratitis capitata - Mediterranean fruit fly , CERCA
|
|
|
102013
|
Cdc25 gene
|
Changes in physiology and/or production
|
Schizosaccharomyces pombe - Fission yeast
|
Cdc25 proteins control entry into and progression through various phases of the cell cycle, including mitosis and S ("Synthesis") phase. They act through dephosphorylation of CDK/cyclin complex.
|
|
104788
|
Cestrum Yellow Leaf Curling Virus promoter
|
|
Cestrum yellow leaf curling virus - CYLCV
|
|
|
103771
|
Chalcone synthase gene promoter
|
|
Antirrhinum majus - Common Snapdragon, Snapdragon
|
|
|
105669
|
Chalcone synthase gene promoter
|
|
Rosa hybrida - Rose, ROSHC
|
|
|
105670
|
Chalcone synthase gene promoter
|
|
Dianthus caryophyllus - Carnation, DIACA
|
|
|
109212
|
Chimeric wheat gliadin
|
|
|
|
|
108904
|
Chitinase 33 transit peptide
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
106332
|
Chitinase coding sequence
|
Resistance to diseases and pests - Fungi
|
Beta vulgaris - Common beet, Sugarbeet, BETMA
|
Chitinases catalyse the hydrolysis of chitin, which is commonly a component of fungal cell walls and the exoskeleton of arthropods, organisms which include many important pathogens and pests, into a linear homopolymer of p-1,4-linked N-acetylglucosamine (GlcNAc) residues.
|
|
100382
|
Chloramphenicol-acetyl-transferase
|
Resistance to antibiotics - Chloramphenicol
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Escherichia coli - ECOLX
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Chloramphenicol acetyltransferase (CAT) is a bacterial enzyme that detoxifies the antibiotic chloramphenicol and is responsible for chloramphenicol resistance in bacteria.
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114687
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Chlorophyll a/b binding protein 1 promoter
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Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
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109363
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Chloroplast transit peptide
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Chlamydomonas reinhardtii - CHLRE
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110305
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Chloroplast transit peptide
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Zea mays - Maize, Corn, MAIZE
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106247
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Chloroplast Transit Peptide
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Nicotiana tabacum - Tobacco, TOBAC
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100365
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Chloroplast transit peptide 2
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Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
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103899
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Chloroplast Transit Peptide 4
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Petunia hybrida - Petunia, PETHY
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102896
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Cholera Toxin
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Production of medical or pharmaceutical compounds (human or animal) - Vaccines
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Vibrio cholerae
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An exotoxin, produced by Vibrio cholerae and Vibrio eltor, thats leeds to the massive, watery diarrhea characteristic of cholera infection.
The cholera toxin is a member of the AB family of toxins. The function of the non-toxic B subunit is to assemble into a ring-shaped, homologous pentamer and to adhere to mem-brane receptors on the intestinal epithelial cell surface (GM1 gangliosides). The pathogenic effect stems from the A subunit. ...
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116037
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Choline dehydrogenase
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Changes in physiology and/or production - Yield, Growth rate, Ripening
Tolerance to abiotic stress - Drought, Salinity
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Escherichia coli - ECOLX
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The protein is involved in the biosynthesis of glycine betaine by oxidizing choline to betaine aldehyde and betaine aldehyde to glycine betaine. Glycine betaine maintains cell water potential by osmotic adjustment. Plant transformed with the choline dehydrogenase gene had increased salt tolerance.
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116039
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Choline dehydrogenase
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Changes in physiology and/or production - Yield, Ripening
Tolerance to abiotic stress - Drought, Salinity
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Sinorhizobium meliloti - RHIML
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The enzyme catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. Glycine betaine maintains cell water potential by osmotic adjustment.
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102122
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Cinnamoyl coenzymeA reductase
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Changes in quality and/or metabolite content - Lignin
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Populus tremula x Populus alba - Gray Poplar
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Cinnamoyl-CoA reductase (CCR) catalyzes the penultimate step in monolignol biosynthesis. It catalyzes the conversion of feruloyl-CoA to coniferaldehyde and is considered the first enzyme in the monolignol-specific branch of the phenylpropanoid pathway. Because downregulation of the CCR gene in annual model plants significantly reduced lignin content, downregulating CCR in a woody perennial was an interesting potential avenue to improve wood quality for pulping.
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115133
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Cinnamyl alcohol dehydrogenase
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Populus tremula x Populus alba - Gray Poplar
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111325
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Citrate synthase gene
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Changes in physiology and/or production - Yield, Growth rate
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Saccharomyces cerevisiae - Yeast, YEASX
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The citrate synthases catalyses the first step of the tricarboxylic acid cycle by converting acetyl-CoA and oxaloacetate to citric acid.
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15027
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CMV coat protein
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Resistance to diseases and pests - Viruses - Mosaic virus - Cucumber mosaic virus (CMV)
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Cucumber mosaic virus - CMV
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The cp gene from CMV encodes the coat protein (CP) gene from Cucumber mosaic cucumovirus. Through a process related to viral cross-protection, transgenic lines with this gene exhibit resistance to infection and subsequent disease caused by CMV.
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114749
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CMV Early Enhancer
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Human betaherpesvirus 5 - Human cytomegalovirus, HCMV, HHV-5
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103554
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c-myc-tag
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Homo sapiens - HUMAN
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115108
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Coat protein
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Cassava brown streak virus - Cassava Brown Streak Virus, CBSV
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115110
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Coat Protein
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Ugandan cassava brown streak virus - UCBSV
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107876
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CoA-transferase alpha 2 subunit gene
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Resistance to diseases and pests - Bacteria
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Rhodococcus equi - RHOE1
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The gene ipdA2 (REQ_00850) is an paralog of idpA of Rhodococcus equi but is localized outside of the cholesterol catabolic gene cluster on the bacterial chromosome. Probably it is the alpha subunit of a heterodimeric coenzyme A transferase. The biological function is not elucidated yet but it was shown that the gene product IpdA2 (GenBank accession CBH46238) acts redundantly to IdpA in the cholesterol catabolism that is important for pathogenicity of R. equi.
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107872
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CoA-transferase alpha subunit gene
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Resistance to diseases and pests - Bacteria
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Rhodococcus equi - RHOE1
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The gene ipdA (REQ_07170) is an ortholog of rv3551 of Mycobacterium tuberculosis and likewise localized in the cholesterol catabolic gene cluster of its bacterial chromosome of Rhodococcus equi. The encoded protein IpdA (GenBank accession CBH46834) carries the PF01144 signature motif of heterodimeric coenzyme A transferase as well as the COG1788 signature of AtoD, the alpha subunit acetoacetyl-CoA transferase of E. coli. ...
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107875
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CoA-transferase beta 2 subunit gene
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Resistance to diseases and pests - Bacteria
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Rhodococcus equi - RHOE1
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The gene ipdB2 (REQ_00860) is an paralog of idpB of Rhodococcus equi but is localized outside of the cholesterol catabolic gene cluster on the bacterial chromosome. Probably it is the beta subunit of a heterodimeric coenzyme A transferase. The biological function is not elucidated yet but it was shown that the gene product IpdB2 (GenBank accession CBH46239) acts redundantly to IdpB in the cholesterol catabolism that is important for pathogenicity of R. equi.
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107873
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CoA-transferase beta subunit gene
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Resistance to diseases and pests - Bacteria
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Rhodococcus equi - RHOE1
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The gene ipdB (REQ_07160) is an ortholog of rv3552 of Mycobacterium tuberculosis and likewise localized in the cholesterol catabolic gene cluster of its bacterial chromosome of Rhodococcus equi. The encoded protein IpdB (GenBank accession CBH46833) carries a COG2057 signature of AtoA, the beta subunit acetoacetyl-CoA transferase of E. coli. ...
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108285
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Coding sequence of scFv4715 antibody
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Production of medical or pharmaceutical compounds (human or animal) - Antibodies and antigens
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Mus musculus - Mouse, House mouse, MOUSE
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Binds to Streptococcus gordonii coat protein. This bacteria is the causal agent of dental plaque/cavity. The synthetic antibody (scFv4715) consist of a heavy (Vh) and light (VL) chain of the variable regions of the immunoglobulin-G, joined by a linker peptide.
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103065
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Cold shock protein gene
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Tolerance to abiotic stress - Cold / Heat, Drought
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Bacillus subtilis - Bacillus, BACIU
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CspB is a type of stress-inducible protein that might be able to protect [i]B. subtilis[/i] cells from damage caused by ice crystal formation during freezing.
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115620
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Common region
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African cassava mosaic virus - ACMV
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114991
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Conlinin1 promoter
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Linum usitatissimum - Flax, Flax, Linseed, LINUS
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114990
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Conlinin1 terminator
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Linum usitatissimum - Flax, Flax, Linseed, LINUS
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114987
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Conlinin2 promoter
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Linum usitatissimum - Flax, Flax, Linseed, LINUS
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114986
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Conlinin2 terminator
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Linum usitatissimum - Flax, Flax, Linseed, LINUS
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111871
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COS site
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Escherichia virus Lambda - Lambda phage, LAMBD
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104319
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CP Peptide
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Use in industrial applications - Bioremediation
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A syntetic metallothionenine that binds heavy metals when expressed in plant tissues.
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103918
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Cruciferin A gene promoter
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Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
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103919
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Cruciferin A gene terminator
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Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
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115761
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Cry14Ab1
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Resistance to diseases and pests - Nematodes
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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CRY14Ab1 is a crystal protein from [i]Bacillus thuringiensis[/i] related to the other crystal proteins CRY1A, CRY3A and CRY4A. Structurally, the protein contains three domains. The protein has been demonstrated to have nematicidal activity against [i]Caenorhabditis elegans[/i], [i]Panagrellus redivivus[/i], [i]Nippostrongylus brasiliensis[/i], [i]Distolabrellus veechi[/i], [i]Meloidogyne spp.[/i] (root knot nematodes), [i]Rotylenchulus reniformis[/i] (reniform nematode), [i]Hopiolaimus spp. ...
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43771
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Cry1A.105
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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Cry1A.105 is a full-length, insecticidal protein consisting of 1177 amino acids with a molecular weight (MW) of 133 kDa. It is a chimeric protein that consists of domains I and II from Cry1Ab or Cry1Ac1, domain III from Cry1F, and the C-terminal domain ...
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14985
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Cry1Ab
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The [i]cry1Ab[/i] gene codes for a delta-endotoxin, commonly known as "Bt-toxin", which confers resistance to the plant to lepidoptera larvae such as the European corn borer ([i]Ostrinia nubilalis[/i]), the southwestern corn borer ([i]Diatraea grandiosella[/i]), pink borer ([i]Sesamia cretica[/i]), Spruce Budworm, Tent caterpillar, Gypsy moth, Diamondback moth, Cabbage looper, Tobacco budworm, and Cabbage worm.
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103109
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Cry1Ab/Ac
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths) - Cotton bollworm (Helicoverpa spp.)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The cry1Ab-Ac gene was constructed by combining 1 – 286 amino acid residues of Domain-I, 287 – 459 are of Domain-II, conforming to Cry1Ab of Bacillus thuringiensis subsp. Kurstaki HD1. Sequence 460-608 amino acid residues are of Domain III, conforming to Cry1Ac of B. thuringiensis subsp. Kurstaki HD73. ...
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14986
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Cry1Ac
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The cry1Ac gene codes for a Bt-toxin, which confers resistance to lepidopteran pests of cotton, such as tobacco budworm (Heliothis virescens), cotton bollworm (Helicoverpa zea), pink bollworm (Pectinophora gossypiella), and soybean looper (Pseudoplusia includens).
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14987
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Cry1F
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The cry1F gene codes for codes for a Bt-toxin, which protects the plant against the European corn borer (Ostrinia nubilalis) and other lepidopterans such as the pink borer (Sesamia spp.), fall armyworm (Spodoptera frugiperda), black cutworm (Agrotis ipsilon) and southwestern corn borer (Diatraea grandiosella).
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14988
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Cry2Ab2
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The cry2A(b) gene encodes codes for a Bt-toxin, which confers resistance to lepidopteran pests of cotton, such as tobacco budworm (Heliothis virescens), cotton bollworm (Helicoverpa zea), pink bollworm (Pectinophora gossypiella), and soybean looper (Pseudoplusia includens).
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101895
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Cry2Ae
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths) - Cotton bollworm (Helicoverpa spp.), Fall armyworm (Spodoptera frugiperda)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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Cry2Ae protein as expressed in cotton has 631 amino acids. The deduced molecular weight is
71 kDa. The Cry2Ae protein is effective in controlling lepidopteran plant feeding larvae such as cotton bollworm larvae, tobacco budworm larvae and fall armyworm larvae which are common pests of cotton.
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14994
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Cry34Ab1
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Resistance to diseases and pests - Insects - Coleoptera (beetles)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The cry34Ab1 gene codes for a 14kDa Bt-toxin Cry34Ab1. When expressed with Cry35Ab1 it results in the mortality of Coleopteran insects, such as western corn rootworm (Diabrotica virgifera), northern corn rootworm (D. barberi), and mexican corn rootworm (D. virgifera zeae) upon oral ingestion.
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14995
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Cry35Ab1
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Resistance to diseases and pests - Insects - Coleoptera (beetles)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The cry35Ab1 gene codes for a 44kDa Bt-toxin Cry35Ab1. When expressed with Cry34Ab1 it results in the mortality of Coleopteran insects, such as western corn rootworm (Diabrotica virgifera), northern corn rootworm (D. barberi), and mexican corn rootworm (D. virgifera zeae) upon oral ingestion.
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14989
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Cry3A
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Resistance to diseases and pests - Insects - Coleoptera (beetles)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The cry3A gene codes for a Bt-Toxin, which confers resistance to western corn rootworm (Diabrotica virgifera virgifera), northern corn rootworm (Diabrotica longicornis barberi) and other related coleopteran species.
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14993
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Cry3Bb1
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Resistance to diseases and pests - Insects - Coleoptera (beetles)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The cry3Bb1 gene, isolated from the soil bacterium Bacillus thuringiensis (Bt) subspecies kumamotoensis, produces the insect control protein Cry3Bb1, a delta-endotoxin. The Cry3Bb1 protein provides protection against the western corn rootworm (Diabrotica vigifera) and northern corn rootworm (Diabrotica barberi).
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14996
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Cry9C
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths) - European corn borer (Ostrinia nubilalis)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The Cry9C protein, when expressed, protects the plants against feeding damage of larvae of the lepidopteran insect European corn borer by selectively binding to specific sites localized on the brush border midgut epithelium of susceptible insect species.
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109361
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Cry9E
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The Cry9E protein, when expressed, protects the plants against feeding damage of larvae of the lepidopteran insect European corn borer by selectively binding to specific sites localized on the brush border midgut epithelium of susceptible insect species.
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102150
|
Cryj gene
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Vaccine against pollen allergies
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Cryptomeria japonica - Japanese cedar
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Cryj is a major allergen of Japanese cedar pollen. Cryj genes are being used to develop vaccines for treatment of Japanese cedar pollinosis/ allergies.
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101900
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CsVMV promoter
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Cassava vein mosaic virus - Cassava vein mosaic virus, CVMV, CsVMV
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103096
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Cyanophycin synthetase
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Use in industrial applications
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Thermosynechococcus elongatus - Cyanobacteria
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Cyanophycin synthetase catalyzes the polymerisation of aspartate monomers to a polyaspartate-chain. The aspartate monomers are covalently linked by their beta-carboxy- and alpha-amino groups. Additional arginine side chains are observed. This biopolymer is produced by a variety of cyaonobacteria such as Thermosynecchococcus elongates as a storage molecule for nitrogen.
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104770
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Cyclobutylpyrimidine dimer photolyase Gene
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Tolerance to abiotic stress
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Oryza sativa - Rice, ORYSA
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Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutylpyrimidine dimers (CPDs), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation. Required for plant survival in the presence of UV-B light. ...
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104593
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Cytochrome b5
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Changes in quality and/or metabolite content - Antioxidants, Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
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Petunia hybrida - Petunia, PETHY
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Cyt b5 protein acts as an electron donor to the Cyt P450 enzyme and is required for full activity of the Cyt P450 enzyme Flavinoid 3' 5' hydroxylase [i]in vivo[/i] and the generation of purple/ blue flower colours.
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108701
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Cytokinin dehydrogenase 1 gene
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Tolerance to abiotic stress - Drought
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Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
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Cytokinin oxidases/dehydrogenases (CKX) catalyze the irreversible degradation of the cytokinins isopentenyladenine, zeatin, and their ribosides in a single enzymatic step by oxidative side chain cleavage.
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108709
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Cytokinin dehydrogenase 1 gene
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Tolerance to abiotic stress - Drought
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Hordeum vulgare - Barley, HORVU
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Cytokinin oxidases/dehydrogenases (CKX) catalyze the irreversible degradation of the cytokinins isopentenyladenine, zeatin, and their ribosides in a single enzymatic step by oxidative side chain cleavage.
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115697
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Cytokinin dehydrogenase 1 signal peptide
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Zea mays - Maize, Corn, MAIZE
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108707
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Cytokinin dehydrogenase 2 gene
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Tolerance to abiotic stress - Drought
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Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
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Cytokinin oxidases/dehydrogenases (CKX) catalyze the irreversible degradation of the cytokinins isopentenyladenine, zeatin, and their ribosides in a single enzymatic step by oxidative side chain cleavage.
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111451
|
Cytosolic starch phosphorylase gene
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Changes in physiology and/or production - Yield
|
Solanum tuberosum - Potato, SOLTU
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Phosphorylases catalyse the reversible phosphorolysis of terminal glucose units of alpha-1,4-glucans. Depending on the concentration of inorganic phosphate and glucose-1-phosphate, the enzyme can both synthesise and degrade glucans.
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102614
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D1 thylakoid membrane protein (psbA) gene terminator
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Nicotiana tabacum - Tobacco, TOBAC
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103772
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D8 gene terminator
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Petunia hybrida - Petunia, PETHY
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110906
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Dc3 promoter
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Daucus carota subsp. sativus - Carrot, DAUCA
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108927
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Defensin coding sequence
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Resistance to diseases and pests - Bacteria, Fungi
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Homo sapiens - HUMAN
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Defensins are a family of microbicidal and cytotoxic peptides thought to be involved in host defense. They are abundant in the granules of neutrophils and also found in the epithelia of mucosal surfaces such as those of the intestine, respiratory tract, urinary tract, and vagina. Members of the defensin family are highly similar in protein sequence and distinguished by a conserved cysteine motif.
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108261
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Defensin gene coding sequence
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Resistance to diseases and pests - Bacteria, Fungi
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Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
Plant defensins exhibit antimicrobial activities, invitro, particularly against filamentous fungi and are thus believed to contribute to the defence arsenal of plants directed against microbial phytopahtogens.
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111875
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Defensin-like protein 1 gene
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Resistance to diseases and pests - Fungi
|
Dahlia merckii - Bedding dahlia, DAHME
|
AMP1 is a cysteine-rich polypeptide of 50 amino acids with a calculated mass of approximately 5 kD. It is a plant defensin that inhibits fungal growth. The protein is expressed in the seeds and protects the developing seedling from pathogenic fungi.
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109219
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Dehydroascorbate reductase coding sequence
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Changes in quality and/or metabolite content - Vitamins
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Oryza sativa - Rice, ORYSA
|
Dehydroascorbate reductase (DHAR) reduces dehydroascorbate (DHA) to ascorbate with glutathione (GSH) as the electron donor.
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113305
|
delta 12-desaturase gene
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Lachancea kluyveri - Yeast, LACKL
|
Facilitates the synthesis of hexadecadienoic acid as well as linoleic acid.
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113299
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delta 15-desaturase gene
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Changes in quality and/or metabolite content - Lipid and fatty acids
|
Pichia pastoris - Yeast, PICPA
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Desaturases catalyze the introduction of double bonds between the carboxylic end of a molecule and a preexisting double bond to introduce further unsaturation into existing polyunsaturated fatty acids or make polyunsaturated fatty acids de novo in mammals deprived of dietary polyunsaturated fatty acids.
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113304
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delta 4-desaturase gene
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Changes in quality and/or metabolite content - Lipid and fatty acids
|
Rebecca salina - Microalga, REBSA
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Delta-4 desaturase is the final enzyme involved in the biosynthesis of docosahexaenoic acid from docosapentaenoic acid.
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113298
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delta 5-desaturase gene
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Changes in quality and/or metabolite content - Lipid and fatty acids
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Rebecca salina - Microalga, REBSA
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Fatty acid desaturase that introduces a cis double bond at the 5-position in 20-carbon polyunsaturated fatty acids incorporated in a glycerolipid that contain a Delta8 double bond.
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113300
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delta 5-elongase gene
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Changes in quality and/or metabolite content - Lipid and fatty acids
|
Pyramimonas cordata - Microalga, PYRCR
|
Catalyses the conversion of eicosapentaenoic acid to docosapentaenoic acid.
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113296
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delta 6-desaturase gene
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Micromonas pusilla - Picoplanktonic green alga, MICPS
|
Delta 6 desaturase (FADS6), a membrane-bound desaturase which converts linoleic acid to γ-linolenic acid or α-linolenic acid to stearidonic acid by introducing a double bond between carbons 6 and 7 from the carboxyl end of the substrate.
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113297
|
delta 6-elongase gene
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Pyramimonas cordata - Microalga, PYRCR
|
delta 6-elongase converts γ-linolenic acid to dihomo-γ-linolenic acid (DHGLA) or stearidonic acid to eicosatetraenoic acid (ETA).
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100267
|
delta(12)-fatty acid dehydrogenase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
The gm-fad2-1 is a fragment of the omega-6 desaturase gene 1 (FAD2-1) from Glycine max (soybean) that corresponds to approximately 40% of the middle portion of the coding region of FAD2-1 (597 bp).
gm-fad2-1 itself does not code for a functional protein, but transcription of this gene fragment transgenic soybean seeds acts to suppress transcription of endogenous omega-6 desaturase, resulting in the high oleic phenotype.
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112726
|
delta(12)-fatty acid desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Carthamus tinctorius - Safflower, CARTI
|
FAD2 genes introduce a double bond at the Δ12 position of an oleic acid on phosphatidylcholine and convert it to linoleic acid.
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115637
|
Delta-12 desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Phytophthora sojae
|
Delta-12 desaturase catalyzes the formation of a double bond at the 12th position from the carboxy end of the fatty acid, converting oleic acid to linoleic acid.
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|
104625
|
delta-15 desaturase gene
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Neurospora crassa - NEUCS
|
Desaturases catalyze the introduction of double bonds between the carboxylic end of a molecule and a preexisting double bond to introduce further unsaturation into existing polyunsaturated fatty acids or make polyunsaturated fatty acids de novo in mammals deprived of dietary polyunsaturated fatty acids.
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115645
|
Delta-4 desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Thraustochytrium sp. - Thraustochytrids
|
Delta-4 desaturase catalyzes the creation of a double bond at the fourth position from the carboxyl end of docosapentaenoic acid (C22:5), converting it into docosahexaenoic acid (C22:6). It was also found that the another substrate for Δ4-desaturase, 22:4ω6, can be parallely desaturated to 22:5ω6.
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115286
|
delta-5 desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Thraustochytrium sp. - Thraustochytrids
|
Delta-5 desaturase converts dihomo-γ-linolenic acid (20:3) to arachidonic acid (20:4), by removing two hydrogen atoms and creating a double bond at the fifth carbon-carbon bond from the carboxylic acid end in fatty acids.
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115651
|
Delta-5 elongase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Ostreococcus tauri - Green algae
|
Delta-5 elongase adds two carbon-hydrogen groups to the carboxyl end of eicosapentaenoic acid (C20:5n-3), converting it to docosapentaenoic acid (C22:5n-3).
|
|
115269
|
delta-6 elongase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Physcomitrella patens - spreading earthmoss, physcomitrella moss
|
Delta-6 elongase is involved in the biosynthesis of polyunsaturated fatty acids and catalyzes the addition of two carbon-hydrogen groups to the carboxyl end of γ-linolenic acid, converting it to dihomo-γ-linolenic acid.
[u]Reactions:[/u]
malonyl-CoA + γ-linolenoyl-CoA + H+ → 3-oxodihomo γ-linolenoyl-CoA + CO2 + coenzyme A
malonyl-CoA + stearidonoyl-CoA + H+ → (8Z,11Z,14Z,17Z)-3-oxoicosatetraenoyl-CoA + CO2 + coenzyme A
|
|
115633
|
Delta-6 elongase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Thalassiosira pseudonana - Centric diatom
|
Delta-6 elongase is involved in the biosynthesis of polyunsaturated fatty acids and catalyzes the addition of two carbon-hydrogen groups to the carboxyl end of γ-linolenic acid, converting it to dihomo-γ-linolenic acid.
[u]Reactions:[/u]
malonyl-CoA + γ-linolenoyl-CoA + H+ → 3-oxodihomo γ-linolenoyl-CoA + CO2 + coenzyme A
malonyl-CoA + stearidonoyl-CoA + H+ → (8Z,11Z,14Z,17Z)-3-oxoicosatetraenoyl-CoA + CO2 + coenzyme A
|
|
115349
|
delta-6-desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Ostreococcus tauri - Green algae
|
Δ6-Desaturases introduce Δ6 double bonds, converting linoleic acid (C18:2,Δ9,12) into γ-linolenic acid (C18:3,Δ6,9,12) and/or α-linolenic acid (C18:3,Δ9,12,15) to stearidonic acid (C18:4,Δ6,9,12,15).
|
|
104623
|
Delta-6-desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Primula juliae - Juliae primrose, PRIJU
|
Catalyses the synthesis of stearidonic acid from α-linoleic acid
|
|
102160
|
delta-9 Acyl-lipid desaturase
|
Tolerance to abiotic stress - Cold / Heat
|
Synechocystis sp. - Cyanobacteria, SYNYX
|
The desC (a.k.a. des9) is involved in the biosynthesis of unsaturated fatty acids (lipid metabolism). Fatty acid unsaturation was found to be essential for tolerance to low temperatures by cyanobacteria. Similar proteins exist in higher plants.
|
|
100728
|
Dicamba monooxygenase gene
|
Resistance to herbicides
|
Stenotrophomonas maltophilia - S. maltophilia, Stenotrophomonas
|
DMO (dicamba monooxygenase) catalyzes the degradation of the herbicide dicamba (3,6-dichloro-o-anisic acid) to non-toxic 3,6-dichlorosalicylic acid (3,6- DCSA) in plants, thus conferring herbicide tolerance.
|
|
14978
|
Dihydrodipicolinate synthase
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Corynebacterium glutamicum - CORGT
|
Dihydropicolinate synthase is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff base with a lysine residue.
|
|
104383
|
Dihydrodipicolinate synthase chloroplast targeting sequence
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
110470
|
Dihydroflavonol-4-reductase
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Iris sp. - Iris, IRIOR
|
The gene encodes dihydroflavonol reductase which functions in the biosynthesis pathway of the pink/ red-coloured anthocyandin 3-O-(6-O-malylglucoside) pigment in iris.
|
|
110471
|
Dihydroflavonol-4-reductase
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Rosa hybrida - Rose, ROSHC
|
The gene encodes dihydroflavonol reductase functions in the biosynthesis of pelargonidin-based anthocyanins in roses.
|
|
111603
|
Dihydroflavonol-4-reductase
|
Changes in quality and/or metabolite content - Pigmentation / Coloration
|
Zea mays - Maize, Corn, MAIZE
|
Dihydroflavonol-4-reductase (DFR A1) is involved in the anthocyanin biosynthesis pathway.
|
|
15009
|
Dihydroflavonol-4-reductase
|
Changes in quality and/or metabolite content - Pigmentation / Coloration
|
Petunia hybrida - Petunia, PETHY
|
The gene encodes dihydroflavonol reductase functions in the biosynthesis of the blue-coloured anthocyanin pigment delphinidin.
|
|
104594
|
Dihydroflavonol-4-reductase
|
Changes in quality and/or metabolite content - Pigmentation / Coloration
|
Dianthus caryophyllus - Carnation, DIACA
|
The gene encodes dihydroflavonol reductase which functions in the biosynthesis pathway of the pink/ red-coloured anthocyandin 3-O-(6-O-malylglucoside) pigment in carnations.
|
|
105819
|
Dihydroflavonol-4-reductase intron
|
|
Petunia hybrida - Petunia, PETHY
|
|
|
105798
|
Dihydroflavonol-4-reductase promoter
|
|
Petunia hybrida - Petunia, PETHY
|
|
|
105799
|
Dihydroflavonol-4-reductase terminator
|
|
Petunia hybrida - Petunia, PETHY
|
|
|
15008
|
DNA Adenine Methylase gene
|
Changes in physiology and/or production - Reproduction - Male sterility
|
Escherichia coli - ECOLX
|
DAM ,when under the control of an anther specific promoter, results in male sterility by preventing transformed plants from producing anthers or pollen via its affects on methylation patters of genes involved in pollen production.
|
|
103764
|
Dorsomycin gene 3'UTR
|
|
Drosophila melanogaster - Common Fruit Fly
|
|
|
101476
|
DsRed2 Fluorescent Protein
|
Selectable marker genes and reporter genes
|
Discosoma sp. - Coral anemones, Sea anemones
|
DsRed2 is a highly engineered monomeric form of the normally tetrameric red fluorescent protein variant of Discosoma sp. red fluorescent protein (drFP583; 1) with faster maturation and lower non-specific aggregation. The DsRed2 sequence contains a series of silent base-pair changes corresponding to human codon-usage preferences for high expression in mammalian cells
|
|
105600
|
E6 gene terminator
|
|
Gossypium barbadense - Sea-island cotton, Egyptian cotton, GOSBA
|
|
|
104862
|
E8 gene promoter
|
|
Solanum lycopersicum - Tomato, SOLLC
|
|
|
111970
|
Early/Late promoter
|
|
|
|
|
104789
|
eCry3.1Ab
|
Resistance to diseases and pests - Insects - Coleoptera (beetles) - Western corn rootworm (Diabrotica virgifera), Northern corn rootworm (Diabrotica barberi)
|
Bacillus thuringiensis - Bt, Bacillus, BACTU
|
An engineered Cry gene active against certain corn rootworm (Diabrotica) species . The gene ecry3.1Ab consists of a fusion between the 5′ end (Domain I, Domain II and 15 amino acids of Domain III) of a modified Cry3A gene (mcry3A) and the 3′ end (Domain III and Variable Region 6) of a synthetic Cry1Ab gene ...
|
|
115065
|
Elongation Factor 1 alpha promoter
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
103905
|
Elongation factor EF-1alpha Intron 1
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
103904
|
Elongation factor EF-1alpha Leader
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
103903
|
Elongation factor EF-1alpha promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
109046
|
Endo‐1,4‐β‐d‐glucanase coding sequence
|
Changes in physiology and/or production - Yield
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
Cel1 is a glycosyl hydrolase (1,4-β-endoglucanase) which binds to the noncrystalline cellulose and xyloglucans, promoting the relaxation of the cell wall during the stages of expansion and elongation of the plant cell.
|
|
111745
|
Endochitinase 2 gene
|
Resistance to diseases and pests - Fungi
|
Hordeum vulgare - Barley, HORVU
|
Endochitinases randomly hydrolyse internal β-1,4-linkages of chitin, releasing oligomers of GlcNAc. Chitin is not present in plant cells, but is a major component of the cell walls of many filamentous, possibly pathogenic, fungi. The presence of endochitinase is therefore part of the plant's defence system against fungal pathogens as it leads to a disruption in the fungal cell wall formation together with beta-1,3-glucanases.
|
|
108903
|
Endochitinase 42 coding sequence
|
Resistance to diseases and pests - Fungi
|
Trichoderma harzianum - TRIHA
|
Endochitinase 42 randomly hydrolyses N-acetyl-beta-D-glucosaminide (1->4)-beta-linkages in chitin and chitodextrinsis, which are major structural components of the fungal cell wall.
|
|
111544
|
Endolysin gene
|
Resistance to diseases and pests - Bacteria
|
Enterobacteria phage T4 - Bacteriophage T4, Phage T4, Coliphage T4, BPT4
|
Endolysin is a bactericidal muralytic enzyme that facilitates bacterial cell wall lysis.
|
|
111453
|
Enhanced blue fluorescent protein gene
|
Selectable marker genes and reporter genes
|
Aequorea victoria - Crystal Jellyfish, Water Jellyfish, AEQVI
|
Enhanced Blue Fluorescent Protein is a genetic mutant of green fluorescent protein (GFP) originally derived from the jellyfish Aequorea victoria. Its emission peak is 450-480nm. It is broadly used as a reporter gene in organisms and cell cultures.
|
|
105732
|
Enhanced Yellow Fluorescent Protein gene
|
Selectable marker genes and reporter genes
|
Aequorea victoria - Crystal Jellyfish, Water Jellyfish, AEQVI
|
Yellow Fluorescent Protein (YFP) is a genetic mutant of green fluorescent protein (GFP) originally derived from the jellyfish Aequorea victoria. Its excitation peak is 514 nm and its emission peak is 527 nm.
|
|
116144
|
Envelope glycoprotein gp160
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Human immunodeficiency virus 1 - HIV-1
|
HIV-1 envelope glycoprotein gp160 is a pre-protein that is cleaved in the host Golgi to produce two proteins: gp120 and gp41.
Surface protein gp120 is the viral protein that binds the host CD4 receptor. Binding to CD4 causes a structural conformation change allowing for a high affinity binding site to be formed for CXCR4 and/or CCR5. The protein is often present as a trimer, has five variable domains and post-translational modifications (glycosylation to evade host immune recognition). ...
|
|
114714
|
Envelope protein
|
|
Japanese encephalitis virus - JEV SA14-14-2
|
Envelope protein binds the host cell surface receptor and mediates membrane fusion between the virus and host cell. Translation of pre-membrane-envelope pre-protein occurs in host cell endoplasmic reticulum (ER) and facilitates viral budding from ER. Dissociation from prM occurs in the Golgi due to low pH.
|
|
111929
|
Epoxide hydrolase promoter
|
|
Ananas comosus - Pineapple, ANACO
|
|
|
112262
|
EPSPS gene promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
112263
|
EPSPS gene terminator
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
110714
|
Erns coding sequence
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Pestivirus A - BVDV-1
|
Erns is a glycoprotein found on the surface of the BVDV viron. In addition to being a virion protein, a proportion of Erns is secreted from infected cells into the extracellular environment as a consequence of it lacking a typical transmembrane anchor domain. ...
|
|
105735
|
Ethylene response factor gene
|
Changes in physiology and/or production - Yield
|
Populus trichocarpa - Western balsam poplar, Black cottonwood, California poplar, POPTR
|
Ethylene Response Factors (ERFs) are a large family of transcription factors that mediate responses to ethylene. Ethylene affects many aspects of wood development and is involved in tension wood formation. Thus ERFs could be key players connecting ethylene action to wood development.
|
|
105200
|
Farnesene Synthase gene
|
Use in industrial applications - Biofuel production
|
Artemisia annua - Artemisia , Sweet Wormwood, Sweet Annie, Sweet Sagewort, Annual Wormwood
|
Te enzyme catalyzes the production of beta-farnesene from farnesyl diphosphate.
|
|
107865
|
FATB2 ACP-thioesterase gene
|
Use in industrial applications - Biofuel production
|
Cuphea wrightii - Wright's waxweed, CUPWR
|
Acyl-acyl carrier protein (ACP) thioesterases play an essential role in chain termination during de novo fatty acid synthesis and in the channeling of carbon flux between the two lipid biosynthesis pathways in plants.
|
|
110907
|
Fatty acid deasturase 2 gene
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
Fatty acid desaturase 2 (FAD2) is involved in fatty acid synthesis in plants and acts by catalyzing the desaturation of oleic acid (C18:1) to linoleic acid (C18:2).
|
|
104323
|
Fatty Acid Desaturase 2
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Linum usitatissimum - Flax, Flax, Linseed, LINUS
|
Catalyses the desaturation of oleic acid to linoleic acid.
|
|
110304
|
Fatty acid desaturase 2 intron
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115652
|
Fatty acid elongase 1 terminator
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
114988
|
Fatty acid elongase promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115650
|
Fatty acid elongation 1 promoter
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
45046
|
Feline leukemia virus envelope glycoprotein
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Feline leukemia virus - Feline leukemia virus, FeLV
|
The feline Leukemia virus env gene (FeLV-env) encodes a glycoprotein. The FeLV-env is used together with the nucleoprotein (FeLV-gag) and reverse transcriptase (FeLV-pol) genes of the feline leukemia virus in a vaccine. The FeLV-env gene induces the production of anti-viral antibodies helping to prevent the disease in cats.
|
|
45047
|
Feline leukemia virus gag gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Feline leukemia virus - Feline leukemia virus, FeLV
|
The feline leukemia virus gag gene (FeLV-gag) encodes the structural proteins of the virion core. The complete FeLV-gag gene is used together with the glycoprotein (FeLV-env) and reverse transcriptase (FeLV-pol) genes of the feline leukemia virus in vaccines to help preventing the disease in cats.
|
|
45048
|
Feline Leukemia Virus pol gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Feline leukemia virus - Feline leukemia virus, FeLV
|
The feline leukemia virus pol gene (FeLV-pol) encodes a reverse transcriptase (enzyme that "converts", i.e., reverse transcribes, RNA into DNA). A portion of the FeLV-pol gene that is not expressed is used together with the glycoprotein (FeLV-env) and the complete nucleoprotein (FeLV-gag) genes of the feline leukemia virus in vaccines to help preventing the disease in cats.
|
|
111326
|
Ferredoxin:NADP+ oxidoreductase transit peptide
|
|
Spinacia oleracea - Spinach, SPIOL
|
|
|
115600
|
Ferredoxin-like amphipathic protein
|
Resistance to diseases and pests - Bacteria
|
Capsicum annuum - Bell pepper, Sweet pepper, Chili pepper, CAPAN
|
Plant ferredoxin-like protein is a Ferredoxin-I protein that is involved in the hypersensitive response (HR) and plant immune response to bacterial pathogens. The protein contains an N-terminal chloroplast transit peptide that causes the protein to accumulate within the chloroplasts of cells. In transgenic applications, the protein can also be found in the cytoplasm. The exact resistance mechanism of this protein to bacterial remains unclear. ...
|
|
115136
|
Ferritin 1
|
Changes in quality and/or metabolite content
Increased levels of iron
Tolerance to abiotic stress
Tolerance to excess iron
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
FERRITIN 1 (FER1) encodes a chloroplastic protein with ferroxidase activity that stores iron in a soluble, non-toxic, readily available form. Ferritins convey tolerance to iron overloading as demonstrated by loss of function mutants with a sensitivity to iron. Mutants also demonstrated smaller leaves, increased susceptibility to oxidative stress, and decreased carbon dioxide fixation.
|
|
110472
|
Ferritin 1 gene
|
Change in vacuole ion profile
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Rosa hybrida - Rose, ROSHC
|
Ferritin is a ubiquitous intracellular protein that stores iron and releases it in a controlled fashion.
|
|
110475
|
Ferritin 2 gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Rosa hybrida - Rose, ROSHC
|
Ferritin is a ubiquitous intracellular protein that stores iron and releases it in a controlled fashion.
|
|
104332
|
Firefly Luciferase
|
Selectable marker genes and reporter genes
|
Photinus pyralis - North American firefly, Common Eastern firefly, Big Dipper firefly, PHOPY
|
Firefly luciferase from Photinus pyralis (luc) is an ATP-dependent luciferase widely used as a reporter enzyme for cell-based gene expression assays, principally due to the high sensitivity and large dynamic range bioluminescence affords.
|
|
108911
|
FLAG Tag
|
|
|
|
|
105446
|
Flavone synthase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Torenia sp. - Torenia hybrid, Wishbone flowers, Blue Wings, TOREN
|
Flavone synthase acts on the flavanones (naringenin, eriodictyol and pentahydroxyflavanone) to produce flavones (apigenin, luteolin and tricetin, respectively).
A major use of flavones in biotechnology is for them to act as co-pigments to enhance the bluing of the anthocyanins.
|
|
15010
|
Flavonoid 3', 5' hydroxylase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration
|
Petunia hybrida - Petunia, PETHY
|
Flavonoid-3', 5'-hydroxylase (F3'5'H) is the key enzyme in the synthesis of 3', 5'-hydroxylated anthocyanins, which are generally required for the expression of blue or purple flower color.
|
|
104606
|
Flavonoid 3', 5'-hydroxylase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Salvia splendens - Salvia, Ornamental Sage, Scarlet Sage, Tropical Sage, SALSN
|
Flavonoid 3',5'-hydroxylase is an enzyme of the phenylpropanoid pathway that is involved in the biosynthesis of the anthocyanidin delphinidin. Delphinidin-related anthocyanins typically have a blue coloured hue.
|
|
43793
|
Flavonoid 3’, 5’-hydroxylase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration
|
Viola sp. - Pansy, VIOLA
|
Flavonoid 3’,5’-hydroxylase is an enzyme of the phenylpropanoid pathway that is involved in the biosynthesis of a group of blue coloured anthocyanins called delphinidins.
|
|
105671
|
Flavonoid 3'-hydroxylase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Chrysanthemum morifolium - Florists chrysanthemum, Mum, Florist's daisy, Hardy garden mum, CHRMO
|
Flavonoid 3'-hydroxylase (F3'H)is a key protein in the anthocyanidin 3-glucosides biosynthesis pathway. Expression of F3'H leads to the of biosynthesis of cyanidin-related anthocyanins. Suppression of its activity results in the accumulation of pelargonidin and/or delphinidin related anthocyanins.
|
|
105672
|
Flavonoid 3'-hydroxylase gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Rosa hybrida - Rose, ROSHC
|
Flavonoid 3'-hydroxylase (F3'H) is a key protein in the anthocyanidin 3-glucosides biosynthesis pathway. Expression of F3'H leads to the of biosynthesis of cyanidin-related anthocyanins. Suppression of its activity results in the accumulation of pelargonidin and/or delphinidin related anthocyanins.
|
|
101507
|
FMV 34S promoter
|
|
Figwort mosaic virus - Figwort mottle virus, FMV, CMoVb
|
|
|
105196
|
FMV 35S Enhancer
|
|
Figwort mosaic virus - Figwort mottle virus, FMV, CMoVb
|
|
|
111066
|
Fructan-fructan-1-fructosyltransferase gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
Cynara cardunculus var. scolymus - Artichoke, Globe artichoke, CYNCS
|
The fructan-fructan-1-fructosyl transferase (FFT) from [i]Cynara scolymus[/i] is an enzyme involved in fructan metabolism. Specifically, inulin, a heterogeneous collection of different length fructans, is biosynthesized in vitro from sucrose by the combined action of two fructosyl transferases: Suc:Suc 1-fructosyl transferase and fructan:fructan 1-fructosyl transferase. FFTs elongate a pre-synthesized fructose chains at the expense of another pre-synthesized chain.
|
|
111545
|
Fructose-1,6-bisphosphatase gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
Solanum tuberosum - Potato, SOLTU
|
Fructose-1,6-bisphosphatase is an enzyme that converts fructose-1,6-bisphosphate to fructose 6-phosphate in gluconeogenesis and the Calvin cycle which are both anabolic pathways. It is part of the sucrose biosynthesis pathway.
|
|
111604
|
Fructose-1,6-bisphosphatase gene promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
103763
|
fs(1)K10 3' UTR
|
|
Drosophila melanogaster - Common Fruit Fly
|
|
|
105090
|
Fusion protein gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Avian orthoavulavirus 1 - Newcastle disease virus, NDV
|
The fusion (F) glycoprotein is one of the proteins that forms the viral envelope of NDV. Its function is to fuse with, and penetrate through the host cell membrane during infection.
|
|
107959
|
GA2-oxidase promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
116153
|
Gag polyprotein
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Human immunodeficiency virus 1 - HIV-1
|
HIV-1 [i]gag[/i] (group specific antigen) encodes a 53 kDa polyprotein, which consists of proteins that mediate virion assembly and budding (binding plasma membrane, creating necessary protein-protein interactions to create spherical particles, recruiting envelope proteins and RNA genome packaging). Translation of [i]gag[/i] occurs on the full unspliced mRNA. ...
|
|
116062
|
Gamma kafarin terminator
|
|
Sorghum bicolor - Sorghum
|
|
|
101271
|
Gamma-glutamylcysteine Synthetase I gene
|
Use in industrial applications - Bioremediation
|
Escherichia coli - ECOLX
|
Gamma-glutamylcysteine synthase plays an important role in the synthesis of glutathione (glutamyl-cysteinyl-glycine, GSH) insofar as it specifically catalyses the ligation of glutamic acid and cysteine to form glutamylcysteine under energy consumption. Other gamma-ECS substrates are not known. Glutathione is formed in a second step, in which glycine is bound to the dipeptide by glutathione synthetase. ...
|
|
104314
|
Gene 4 transcription terminator
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
103649
|
gI Glycoprotein
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Suid alphaherpesvirus 1 - SHV-1
|
GI is belived to contribute to the viruses virulence by facilitating the spread of the virus through the central nervous system.
|
|
103517
|
Gibberellin 20 Oxidase-1 gene
|
Changes in physiology and/or production - Growth rate
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
GA 20-oxidase 1 is a key enzyme involved in gibberellin (GA) biosynthesis.
GAs consist of a large family of tetracyclic diterpenoids and are associated with a number of plant growth and developmental processes such as seed germination, stem elongation, flowering and fruit development.
Inactivation of gibberellin 20-oxidase decreases active gibberellin levels and creates the so-called semi-dwarf phenotype. Over-expression of the gene results in significantly longer plants.
|
|
111070
|
Gibberellin 2-beta-dioxygenase gene
|
Changes in physiology and/or production - Growth rate
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
GA2-oxidase is involved in catalyzing a reaction that results in the degradation of active gibberellin.
|
|
103623
|
Globulin 1 Promotor
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
103624
|
Globulin 1 Terminator
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
115830
|
Globulin-1 promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
106343
|
Glucanase coding sequence
|
Resistance to diseases and pests - Fungi
|
Beta vulgaris - Common beet, Sugarbeet, BETMA
|
Glucanases are enzymes that break down a glucan, a polysaccharide made of several glucose sub-units.
|
|
109371
|
Glucose 6 Phosphate Translocator coding sequence
|
Changes in quality and/or metabolite content - Carbohydrates
|
Solanum tuberosum - Potato, SOLTU
|
Responsible for the transport of Glc6P into plastids of heterotrophic tissues where it can be used as a carbon source for starch biosynthesis, as substrate for fatty acid biosynthesis or as substrate for NADPH generation via the oxidative pentose phosphate pathway.
|
|
110671
|
Glucose-6-phosphate/phosphate-translocator gene
|
Changes in physiology and/or production - Yield
Changes in quality and/or metabolite content - Carbohydrates
|
Pisum sativum - Garden pea, PEA
|
The gpt gene from pea (Pisum sativum) codes for a plastid glucose-6-phosphate/phosphate translocator, an antiporter whose main physiological function is to import glucose-6-phosphate, in exchange for inorganic phosphate, into the plastids of heterotrophic tissue.
|
|
107881
|
Glutamine synthetase gene
|
Changes in physiology and/or production - Growth rate
|
Pinus sylvestris - Scotch pine, Scots pine, PINSY
|
Glutamine synthetase (GS) catalyses the incorporation of ammonium to glutamate for glutamine biosynthesis, the first step in inorganic nitrogen incorporation into amino acids. ...
|
|
104869
|
Glutathione S-transferase gene promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
103765
|
Glutelin gene promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
112995
|
Glutelin gene promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
103766
|
Glutelin signal peptide
|
|
Oryza sativa - Rice, ORYSA
|
|
|
103767
|
Glutelin terminator
|
|
Oryza sativa - Rice, ORYSA
|
|
|
110854
|
Glyceraldehyde 3-phosphate dehydrogenase promoter
|
|
Cochliobolus heterostrophus - Southern corn leaf blight fungus
|
|
|
108046
|
Glycine Oxidase gene
|
Resistance to herbicides - Glyphosate
|
Bacillus subtilis - Bacillus, BACIU
|
This enzyme is a homotetramer with a monomer molecular mass of 42 kDa. ThiO is required for the biosynthesis of the thiazole moiety of thiamin pyrophosphate.
|
|
111061
|
Glycinin gene promoter
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
111060
|
Glycinin gene terminator
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
105174
|
Glycoprotein B gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Gallid alphaherpesvirus 1 - ILTV
|
Glycoprotein B is an envelope glycoprotein that forms spikes at the surface of the virion envelope. It is essential for the fusion of viral and cellular membranes leading to virus entry into the host cell. Membrane fusion is mediated by the fusion machinery composed at least of gB and the heterodimer gH/gL
|
|
103640
|
Glycoprotein B promoter
|
|
Gallid alphaherpesvirus 2
|
|
|
114983
|
Glycoprotein D
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Gallid alphaherpesvirus 1 - ILTV
|
Glycoprotein D is likely involved in viral entry into the cell.
|
|
115613
|
Glycoprotein Gc
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines, Antibodies and antigens
|
Rift Valley fever phlebovirus - RVFV
|
Rift Valley Fever Virus glycoproteins Gn and Gc are the major structural antigens found on the virion particle. Together the two proteins are present as heterodimers and form the icosahedral shell of the virion. [i]In vitro[/i] Gn and Gc form virus-like particles and can induce immunity in animals. Baculovirus expression systems expressing only Gc results in highly pleiomorphic virus-like particles. Thus, for homogeneous virus particle surfaces, heterodimer expression (Gn) is required.
|
|
115612
|
Glycoprotein Gn
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines, Antibodies and antigens
|
Rift Valley fever phlebovirus - RVFV
|
Rift Valley Fever Virus glycoproteins Gn and Gc are the major structural antigens found on the virion particle. Together the two proteins are present as heterodimers and form the icosahedral shell of the virion. [i]In vitro[/i] Gn and Gc form virus-like particles and can induce immunity in animals. Baculovirus expression systems have demonstrated that Gn is required for the expression of homogeneous virion particle surfaces.
|
|
114984
|
Glycoprotein I
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Gallid alphaherpesvirus 1 - ILTV
|
Glycoprotein I is likely involved in viral cell-to-cell spread.
|
|
14998
|
Glyphosate oxidoreductase gene
|
Resistance to herbicides - Glyphosate
|
Ochrobactrum anthropi - OCHAN
|
The gox gene produces glyphosate oxidase (GOX) – an enzyme that accelerates the normal breakdown of the herbicide glyphosate into two non-toxic compounds, aminomethylphosphonic acid (AMPA) and glyoxylate.
|
|
48363
|
Glyphosate-N-Acteyltransferase gene
|
Resistance to herbicides - Glyphosate
|
Bacillus licheniformis - BACLI
|
Glyphosate-N-acetyltransferase expression in genetically modified plants may lead to detoxification of the glyphosate agent. This is brought about by the transfer of an acetyl group from acetyl CoA to the secondary amine group of glyphosate.
The resulting N-acetylglyphosate does not have the ability to inhibit the activity of the EPSPS enzyme, and the genetically modified plants are able to grow despite glyphosate treatment.
|
|
115789
|
gos2 promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
114674
|
Granule Bound Starch Synthase 1 Promoter
|
|
Manihot esculenta - Cassava, Brazilian arrowroot, Yuca, Manioc, Mandioca, MANES
|
|
|
14997
|
Granule bound starch synthase gene promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
115566
|
Granule bound starch synthase spacer
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
48072
|
Granule-bound starch synthase gene
|
altered carbohydrate composition: increased amylopectin content
|
Solanum tuberosum - Potato, SOLTU
|
The granule-bound starch synthase (GBSS) enzyme is responsible for the synthesis of amylose in the amyloplasts of potato tubers. Inhibition of GBSS leads to the accumulation of amylopectin in the starch fraction.
|
|
111969
|
Granulocyte macrophage-colony stimulating factor gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Homo sapiens - HUMAN
|
Granulocyte-macrophage colony-stimulating factor (GM-CSF), is a glycoprotein secreted by macrophages, T cells, mast cells, NK cells, endothelial cells and fibroblasts that functions as a cytokine.
|
|
45846
|
Green Fluorescent Protein gene
|
Selectable marker genes and reporter genes
|
Aequorea victoria - Crystal Jellyfish, Water Jellyfish, AEQVI
|
The green fluorescent protein (GFP) is a protein that exhibits bright green fluorescence when exposed to light in the blue to ultraviolet range
|
|
104723
|
Growth Hormone gene
|
Changes in physiology and/or production - Growth rate
|
Oncorhynchus tshawytscha - Chinook Salmon, King Salmon, ONCTS
|
The expression of growth hormone alters aggregate metabolic activity in several ways: lipid breakdown and mobilization are increased, and energy is deployed more readily for maintenance or growth; protein synthesis is increased, providing the raw material for additional body mass; mineral uptake is increased, promoting skeletal development and a longer, leaner morphology; and, feeding efficiency (i.e., feed conversion ratio) is improved.
|
|
109220
|
GTP cyclohydrolase I coding sequence
|
Changes in quality and/or metabolite content - Vitamins
|
Escherichia coli - ECOLX
|
GTP cyclohydrolase I, an enzyme that catalyzes the first reaction in the pathway for the biosynthesis of the pteridine portion of folic acid
|
|
104689
|
H6 gene 3'UTR
|
|
Gossypium barbadense - Sea-island cotton, Egyptian cotton, GOSBA
|
|
|
103890
|
H6 Gene Promoter
|
|
Vaccinia virus - Poxvirus, Smallpox vaccine, VACV, VV, Vaccinia
|
|
|
108047
|
Harpin protein coding sequence
|
Resistance to diseases and pests
|
Pectobacterium carotovorum - PECCA
|
hrpN encodes a harpin protein, which elicits the hypersensitive response and systemic acquired resistance in plants.
|
|
111521
|
HB17 transcription factor gene
|
Changes in physiology and/or production - Growth rate
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
The HB17 protein is a homodomain-leucine zipper (HD-Zip) protein which is part of a family of plant transcription factors. These are proteins that bind to specific DNA sequences and regulate gene expression and have been shown to play an important role in the modulation of plant growth and development.
HB17 is a member of the class II subfamily of HD-Zip proteins which form either homodimers or heterodimers with other HD-Zip II proteins and function as repressors of gene expression.
|
|
100356
|
Heat shock protein 17.3 terminator
|
|
Triticum aestivum - Wheat
|
|
|
114158
|
Heat shock protein 81-2 promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
111062
|
Heat-labile enterotoxin, B subunit gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Escherichia coli - ECOLX
|
Heat-labile enterotoxin (LT) is a hetero-oligomeric AB 5 type enterotoxin composed of a 27 kDa A subunit with toxic ADP ribosyl transferase activity and a stable noncovalent-linked pentamer of 11.6 kDa B subunits.
The B subunit pentamer mediates holotoxin binding to ganglioside GM1 on intestinal epithelial cells, with lower affinity for GD1B, asialoGM1 and lactosylceramide gangliosides.
|
|
101873
|
Heatshock protein 80 gene promoter
|
|
Brassica oleracea - Wild cabbage, Crucifers, BRAOL
|
|
|
45883
|
Hemagglutinin gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
Influenza virus hemagglutinin (HA), a homotrimer of subunits with two polypeptide chains, HA, and HA2, mediates binding of the virus to sialic acid-containing cell-surface receptors, initiating endocytosis, and the subsequent fusion of the viral and endosomal membranes by an acid-induced conformational change. A domain formed by the HA, chain contains the receptor-binding site and a significant proportion of the antigenic epitopes. ...
|
|
108907
|
Hevien gene promoter
|
|
Hevea brasiliensis - Rubber tree, Para rubber tree, SiringaTree, Jebe, HEVBR
|
|
|
103022
|
Hexahistidine tag
|
Protein purification
|
|
The histidine affinity tag consists of 6 histidine amino acid residues located at the N- or C- terminus of recombinant protein. Purification of the recombination protein involves the use of immobilized metal affinity chromatography, which takes advantage of the high affinity of the hexahistidine residues for transition metal ions (e.g Ni2+ (most common), Zn2+, Cu2+ or Co2+). ...
|
|
114678
|
Hexokinase-2
|
Changes in quality and/or metabolite content - Carbohydrates
|
Saccharomyces cerevisiae - Yeast, YEASX
|
Hexokinases catalyze the phosphorylation of D-hexose using ATP to form D-hexose 6-phosphate and ADP. HXK2 is involved in glucose-6-phosphate biosynthesis, fructose catabolism, and mannose degradation.
|
|
102884
|
High molecular weight glutenin subunit 1Ax1 gene promoter
|
|
Triticum aestivum - Wheat
|
|
|
104648
|
Histone H3 Gene II intron 1
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
104646
|
Histone H4 gene 3' UTR
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
104647
|
Histone H4 gene Promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
112017
|
Homeodomain-leucine zipper 4 gene
|
Tolerance to abiotic stress - Drought, Salinity
|
Helianthus annuus - Sunflower, HELAN
|
HAHB4 is a member of the Helianthus annuus (sunflower) subfamily I of HD-Zip proteins that has been previously shown to be transcriptionally regulated by the availability of water and by abscisic acid.
|
|
112018
|
Homeodomain-leucine zipper 4 promoter
|
|
Helianthus annuus - Sunflower, HELAN
|
|
|
103738
|
Homologues of Cladosporium fulvum Resistance genes of the Vf region
|
Resistance to diseases and pests - Fungi
|
Malus domestica - Apple, MALDO
|
The genes encode for resistance against Venturia inaequalis (apple scab). The gene product consists an extracellular receptor protein of a leucine-rich repeat (LRR) class with a transmembrane (TM) region acting as a membrane anchor.
The role of the predicted protein has yet to be demonstrated however by analogy to the tomato Cf gene it is likely that the HcrVf2 in an extracellular receptor involved in pathogen recognition.
|
|
108896
|
Hor3-1 gene promoter
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
108897
|
Hor3-1 transit peptide
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
101595
|
Hordein B1 promoter
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
101596
|
Hordein B1 terminator
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
105017
|
hr5 Transcriptional Enhancer
|
|
Autographa californica multiple nucleopolyhedrovirus - AcMNPV
|
|
|
103901
|
HSP 70 5' untranslated leader sequence
|
|
Petunia hybrida - Petunia, PETHY
|
|
|
103922
|
HSP17.9 Leader Sequence
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
100359
|
Hsp70 intron
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
103762
|
HSP70 minimal promoter
|
|
Drosophila melanogaster - Common Fruit Fly
|
|
|
103749
|
Human Cytomegalovirus promoter
|
|
Human betaherpesvirus 5 - Human cytomegalovirus, HCMV, HHV-5
|
|
|
104312
|
Human Metallothionenine 1A
|
Use in industrial applications - Bioremediation
|
Homo sapiens - HUMAN
|
Metallothionein has been implicated in a number of functions, including toxic metal detoxification, as a metal chaperone and in metal ion homeostasis.
|
|
115581
|
Human polymerase 1 promoter
|
|
Homo sapiens - HUMAN
|
|
|
115614
|
Human tissue plasminogen activator leader sequence
|
|
Homo sapiens - HUMAN
|
|
|
100292
|
Hygromycin B phosphotransferase gene
|
Resistance to antibiotics - Hygromycin
|
Streptomyces hygroscopicus - STRHY
|
The hygromycin B phosphotransferase encoded by the hph gene specifically inactivates the antibiotic hygromycin by phosphorylation.
|
|
14991
|
Hygromycin B phosphotransferase gene
|
Resistance to antibiotics - Hygromycin
Selectable marker genes and reporter genes
|
Escherichia coli - ECOLX
|
The hygromycin B phosphotransferase encoded by the hpt gene specifically inactivates the antibiotic hygromycin by phosphorylation.
|
|
113355
|
Hypersensitive response assisting protein gene
|
Resistance to diseases and pests
|
Capsicum annuum - Bell pepper, Sweet pepper, Chili pepper, CAPAN
|
Hypersensitive response-assisting protein (HRAP) has been previously reported as an amphipathic plant protein isolated from sweet pepper that intensifies the harpin(Pss)-mediated hypersensitive cell death.
|
|
116156
|
I3L promoter
|
|
Vaccinia virus - Poxvirus, Smallpox vaccine, VACV, VV, Vaccinia
|
|
|
111877
|
Imidazoleglycerol-phosphate dehydratase gene
|
Selectable marker genes and reporter genes
|
Saccharomyces cerevisiae - Yeast, YEASX
|
The enzyme imidazoleglycerol-phosphate dehydratase (IGPD) catalyses the conversion of imidazoleglycerol-phosphate to imidazoleacetol-phosphate which is a critical step in the histidine biosynthesis pathway.
It is used in research as a bacterial selection marker, whereby mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts.
|
|
111876
|
Imidazoleglycerol-phosphate dehydratase promoter
|
|
Saccharomyces cerevisiae - Yeast, YEASX
|
|
|
111878
|
Imidazoleglycerol-phosphate dehydratase terminator
|
|
Saccharomyces cerevisiae - Yeast, YEASX
|
|
|
105018
|
Immediate-early-1 gene promoter
|
|
Autographa californica multiple nucleopolyhedrovirus - AcMNPV
|
|
|
105058
|
In2-1 Terminator
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
111591
|
Inorganic phosphate transporter 2 gene
|
Changes in physiology and/or production
Changes in quality and/or metabolite content
|
Solanum tuberosum - Potato, SOLTU
|
The root-specific phosphate transporter 2 is involved in the uptake of phosphate from the soil.
|
|
111605
|
Inorganic pyrophosphatase gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
Escherichia coli - ECOLX
|
The inorganic pyrophosphatase catalyzes the hydrolysis of inorganic pyrophosphate (PPi) into two phosphate ions.
|
|
116057
|
Insecticidal protein ipd072Aa
|
Resistance to diseases and pests - Insects - Coleoptera (beetles) - Western corn rootworm (Diabrotica virgifera)
|
Pseudomonas chlororaphis - PSECL
|
[i]Pseudomonas chlororaphis[/i] IPD072Aa demonstrates selective insecticidal activity against coleoptera species, such as [i]Diabrotica virgifera[/i], while not effecting lepidopteran and hemipteran species. The protein acts by disrupting of the midgut epithelium by causing cells to swell and burst. The mechanism has yet to be elucidated, but it may not be through pore formation.
IPD072Aa is 86 amino acids in length and has a molecular weight of approximately 10 kDa.
|
|
108266
|
Interferon alpha coding sequence
|
Resistance to diseases and pests
|
Gallus gallus - Chicken, CHICK
|
Interferons (IFNs) are a group of polypeptides that are secreted from most all eukaryotic cells in response to external signals. They are classified into three groups, designated type I, type II and type III. Type I IFN (α and β), are expressed rapidly after viral infection, and represent a first line of defence initiated by the innate immune response.
|
|
113226
|
Internal Ribosome Entry Sequence
|
|
Cardiovirus A - Cardiovirus A, EMCV
|
|
|
115112
|
Iron-regulated transporter 1
|
Changes in quality and/or metabolite content
Increased levels of iron
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
The [i]Arabidopsis thaliana[/i] IRON-REGULATED TRANSPORTER 1 (IRT1) is a high-affinity iron (ferrous ion - Fe2+) transporter, essential for the uptake of iron from the soil into the root epidermal layer. The protein belongs to the Zrt/Irt-like protein (ZIP) family of transporters and is involved in cellular metal homeostasis. IRT1 also mediates the uptake of divalent metal ions, including heavy metals, under iron-deficient conditions. The availability of secondary metal ions (e.g. ...
|
|
103023
|
KDEL ER retention signal
|
|
|
|
|
103757
|
kilA gene
|
Selectable marker genes and reporter genes
|
Enterobacter aerogenes - Enterobacter
|
This gene, along with telAB, confers resistance to the chemical compound potassium tellurite (K2TeO3). The use of this gene as marker was developed to suit strains that were aimed to be released in field trials, where it is not desirable to use antibiotic resistance genes as marker tools for tracking the bacteria. Makes selective plating on potassium tellurite possible.
|
|
47790
|
Killer Protein 4
|
Resistance to diseases and pests - Fungi
|
Ustilago maydis virus H1
|
KP4 specifically inhibits voltage-gated calcium channels inhibiting cell growth and division by blocking calcium import.
The KP4 gene is derived from the genome of a double-stranded RNA virus (Ustilago Maydis Virus 4, UmV4, Totiviridae, Totivirus, 00.075.0.01), which is present in the tissue of certain fungal strains of corn smut (Ustilago maydis). Expression of the KP4 gene leads to the production of the KP4 (killer protein 4). ...
|
|
103893
|
Kunitz trypsin inhibitor gene promoter
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
103894
|
Kunitz trypsin inhibitor gene terminator
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
111315
|
L700 promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
111905
|
Lac operator region
|
|
Escherichia coli - ECOLX
|
|
|
111879
|
Lac operon promoter
|
|
Escherichia coli - ECOLX
|
|
|
111880
|
Lac operon repressor gene
|
|
Escherichia coli - ECOLX
|
The lactose operon repressor is a DNA binding protein that functions to regulate the expression of the Lac operon.
In the absence of lactose it inhibits the expression of the genes lacZ-lacY-lacA which code for the lactose-degrading enzymes of the operon by binding to the operator region of the Lac operon, thus hindering RNA polymerase from binding to the Lac promoter.
The repressor is inactivated by lactose which binds to the repressor. ...
|
|
115762
|
Leader sequence
|
|
Tobacco etch virus - TEV
|
|
|
103025
|
LeB4 Signal peptide
|
|
Vicia faba - Broad Bean, Tick Bean, Windsor Bean, Horse Bean, Pigeon Bean, Field Bean
|
|
|
114989
|
Lectin terminator
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
110675
|
Leghaemoglobin gene
|
Changes in physiology and/or production
Changes in quality and/or metabolite content - Carbohydrates
|
Lotus japonicus - Birdsfoot trefoil, LOTJA
|
Leghaemoglobin is a nitrogen or oxygen carrier, because naturally occurring oxygen and nitrogen interact similarly with this protein; and a hemoprotein found in the nitrogen-fixing root nodules of leguminous plants. It is produced by legumes in response to the roots being colonized by nitrogen-fixing bacteria, termed rhizobia, as part of the symbiotic interaction between plant and bacterium: roots not colonized by Rhizobium do not synthesise leghaemoglobin. ...
|
|
110932
|
Lichenase coding sequence
|
Selectable marker genes and reporter genes
|
Ruminiclostridium thermocellum - CLOTM
|
The licB gene encodes lichenase (β-1,3:1,4-Dendoglucanase). Based on the properties of the lichenase reporter, this reporter may be useful for the monitoring of transgenes in agrocenoses.
|
|
110731
|
Light inducible tissue-specific LS1 gene
|
Selectable marker genes and reporter genes
|
Solanum tuberosum - Potato, SOLTU
|
LS1 is a single-copy gene from potato, which displays a leaf/stem-specific and light-inducible pattern of expression.
In vivo it is expressed in a leaf/stem specific manner and encodes a 10.8 kd protein associated with the oxygen evolving complex of photosystem II.
|
|
111936
|
Light-inducible tissue-specific LS1 intron 2
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
112728
|
Linin gene promoter
|
|
Linum usitatissimum - Flax, Flax, Linseed, LINUS
|
|
|
48030
|
Lipoxygenase 3
|
Resistance to chewing insects
|
Solanum nigrum - Black nightshade, SOLNI
|
The native S. nigrum gene LOX3 (S. nigrum lipoxygenase 3) codes for a jasmonic acid biosynthesis enzyme.
Jasmonates are known plant signalling substances. They play an important role in development processes (maturation of pollen, fruit and seed) and also in plant reactions to biotic and abiotic stress factors, including the production of antibodies for the direct and indirect defence of plants against chewing insects. ...
|
|
115696
|
LL-37 peptide
|
Production of medical or pharmaceutical compounds (human or animal)
|
Homo sapiens - HUMAN
|
Cathelicidin antimicrobial peptide is the only cathelicidin protein found in humans and is location on chromosome 3p21. The sequence contains 4 exons and is translated to hCAP18, a pre-pro-protein, containing signal peptide, a conserved pro-sequence (cathelin-like domain) and a C-terminal antimicrobial peptide, LL-37. ...
|
|
108705
|
LOC_Os04g11040.1 promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
103619
|
Low Phytic Acid 1
|
Changes in quality and/or metabolite content
|
Sorghum bicolor - Sorghum
|
Gene LPA1 reduces the synthesis of phytic acid which results in increased zinc and iron bio-availability.
|
|
103069
|
loxP recombination site
|
|
Bacteriophage P1 - Phage P1
|
|
|
105059
|
Ltp2 Promoter
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
103755
|
Luciferase alpha and beta subunit fusion gene
|
Selectable marker genes and reporter genes
|
Vibrio harveyi - Vibrio, V. harveyi
|
The luxA and luxB genes encoding the luciferase from Vibrio harveyi were fused by site-directed mutagenesis so that one polypeptide was encoded by the fused gene. The protein encodes a luciferase enzyme. This gene/protein is commonly used in biotechnology as reporters of gene expression.
|
|
100377
|
Luciferase alpha subunit
|
Selectable marker genes and reporter genes
|
Xenorhabdus luminescens - P. luminescens
|
LuxA encodes a thermostable luciferase. This gene/protein is commonly used in biotechnology as reporters of gene expression.
|
|
100378
|
Luciferase beta subunit
|
Selectable marker genes and reporter genes
|
Xenorhabdus luminescens - P. luminescens
|
LuxB encodes a thermostable luciferase. This gene/protein is commonly used in biotechnology as reporters of gene expression.
|
|
45874
|
luxCDABE genes
|
Selectable marker genes and reporter genes
|
Photorhabdus luminescens - Bacteria
|
The luxCDABE operon of the bioluminescent bacterium [i]Photorhabdus luminescens[/i] is commonly used as a transcriptional reporter to facilitate the quantification of gene expression. ...
|
|
105063
|
Lycopene beta cyclase gene
|
Changes in quality and/or metabolite content - Vitamins
|
Narcissus pseudonarcissus - Wild daffodil, Lent lily, Daffodil, NARPS
|
Catalyses the cyclisation of the lycopene carotenoid psi-end group into a carotenoid beta-end group in the final step of the synthesis of beta carotene
|
|
111935
|
Lycopene beta cyclase gene
|
Changes in quality and/or metabolite content
|
Ananas comosus - Pineapple, ANACO
|
Catalyses the cyclisation of the lycopene carotenoid psi-end group into a carotenoid beta-end group in the final step of the synthesis of carotenoids.
|
|
111937
|
Lycopene epsilon-cyclase gene
|
Changes in quality and/or metabolite content
|
Ananas comosus - Pineapple, ANACO
|
Lycopene ϵ-cyclase (LCY-ϵ) is involved in the first step of the α-branch synthesis pathway of carotenoids from lycopene in plants.
|
|
108931
|
Lysozyme coding sequence
|
Resistance to diseases and pests - Bacteria
|
Homo sapiens - HUMAN
|
Lysozymes are enzymes that damage bacterial cell walls by catalyzing hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins. Lysozyme is abundant in a number of secretions, such as tears, saliva, human milk, and mucus. It is also present in cytoplasmic granules of the macrophages and the polymorphonuclear neutrophils (PMNs).
|
|
112601
|
M27939 Intron Sequence
|
|
|
|
|
103773
|
mac-1 Promoter
|
|
|
|
|
115790
|
MADS-box transcription factor zmm28
|
Changes in physiology and/or production - Yield
|
Zea mays - Maize, Corn, MAIZE
|
MADS-box proteins contain a highly conserved DNA -binding domain at the N-terminus and function as transcription factors to regulate diverse processes, such as growth and development among others. The transcription factor can act as a homodimer or a heterodimer. ...
|
|
105057
|
Maize α-Amylase Gene
|
Changes in physiology and/or production - Reproduction - Male sterility
|
Zea mays - Maize, Corn, MAIZE
|
Alpha-amylases belong to a family of glycosyl-hydrolases catalyzing hydrolysis of (1-4)-α-Dglucosidic linkages in polysaccharide molecules, such as starch.
|
|
115609
|
Major immediate early promoter containing intron A
|
|
Human betaherpesvirus 5 - Human cytomegalovirus, HCMV, HHV-5
|
|
|
48455
|
Major Spidroin I protein coding sequence
|
Use in industrial applications
|
Nephila clavipes - Golden silk orbweaver spider
|
The MaSpI gene encodes for one of two spider silk proteins in the dragline core fibre of the golden silk orbweaver spider Nephila clavipes.
|
|
48456
|
Major Spidroin II protein coding sequence
|
Use in industrial applications
|
Nephila clavipes - Golden silk orbweaver spider
|
The MaSpII gene encodes for one of two spider silk proteins in the dragline core fibre of the golden silk orbweaver spider Nephila clavipes.
|
|
115848
|
Malate dehydrogenase transit peptide
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115851
|
Male tissue specific siRNA target sequence
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
115695
|
Maltose binding protein affinity tag
|
Protein purification
|
Escherichia coli - ECOLX
|
The maltose binding protein (MBP) purification tag is an amino acid sequence attached proteins to allow for the purification and isolation of a recombinant using amylose resin-based chromatography. The methodology exploits the maltose binding capabilities of [i]Escherichia coli[/i] gene [i]malE[/i] (maltose/maltodextrin-binding periplasmic protein). During purification, the MBP tag binds to amylose resin while the other, non-tagged proteins are eluted. ...
|
|
101417
|
Mannopine Synthase Gene Promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
101418
|
Mannopine synthase gene terminator
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
103774
|
Mannopine synthase gene terminator
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
111324
|
Matrix processing peptidase transit peptide
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
115574
|
Matrix protein 1
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
Matrix protein 1 (M1) is essential for the viral structure and lifecycle. The protein associates in multimeric complexes to form the nucleocapsid, a rigid proteinous shell beneath the lipid membrane. M1 stabilizes the 3D structure of the envelope. The shape (filamentous or spherical) of the virion is also determined by M1. ...
|
|
115572
|
Matrix protein 2
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
Matrix protein 2 forms a proton-selective channel that required for the release of the viral genome during entry. After binding receptors on the host cell surface, the virus enters the cell by endocytosis, which acidifies the endosome. The low pH causes an activation of the channels, which then allow the influx of protons into the viral particle. ...
|
|
43634
|
mCry3A
|
Resistance to diseases and pests - Insects - Coleoptera (beetles) - Western corn rootworm (Diabrotica virgifera)
|
Bacillus thuringiensis - Bt, Bacillus, BACTU
|
mCry3A delta-endotoxin is a synthetic, maize optimized, modified cry3A (mcry3A) gene whose expression produces a mCry3A insect control protein that is a member of a class of proteins which occur naturally in the gram-positive soil bacterium Bacillus thuringiensis subsp. tenebrionis. ...
|
|
114157
|
mCry51Aa2
|
Resistance to diseases and pests - Insects
|
Bacillus thuringiensis - Bt, Bacillus, BACTU
|
The mutagenised Cry51Aa2 variant protein, originally derived from soil bacterium [i]Bacillus thuringuensis[/i] EG2934, is a member of the crystal (Cry) family of proteins that confer enhanced insecticidal activity against hemipteran and thysanopteran pests. ...
|
|
110605
|
MdMYB10 transcription factor
|
Changes in quality and/or metabolite content - Flavonoids (e.g. anthocyanin)
|
Malus domestica - Apple, MALDO
|
The MdMYB10 gene from a red-fleshed apple coding for a transcription factor involved in regulating the biosynthesis of the anthocyanin cyanidin 3-galactoside.
|
|
110607
|
MdMYB10 transcription factor R6 promoter
|
|
Malus domestica - Apple, MALDO
|
|
|
110608
|
MdMYB10 transcription factor terminator
|
|
Malus domestica - Apple, MALDO
|
|
|
103881
|
Metallothionein-like gene promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
110059
|
Metallothionein-like gene terminator
|
|
Oryza sativa - Rice, ORYSA
|
|
|
105411
|
MG 40k antigen gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Mycoplasma gallisepticum - MG, MYCGL
|
The polypeptide produced from this coding sequence elicits an immune response in when administered to domestic chicken thereby resulting in immunity against chronic respiratory disease due to Mycoplasma gallisepticum infection.
|
|
105360
|
mgc3 gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Mycoplasma gallisepticum - MG, MYCGL
|
The protein MGC3, is a 120-kDa membrane protein and a homologue of 130-kDa protein encoded by the ORF6 gene, which is a part of P1 operon of M. pneumoniae.
MGC3 protein encoded by the mgc3 gene may function as a cytoadherence-associated molecule because the M. pneumoniae 130-kDa protein has been implicated in the cellular adhesion process.
|
|
116049
|
Mini-stop codon sequence
|
|
|
|
|
106264
|
Modified cecropin peptide coding sequence
|
Resistance to diseases and pests - Bacteria, Fungi
|
|
Cecropins are antimicrobial peptides. Cecropins lyse bacterial cell membranes; they also inhibit proline uptake and cause leaky membranes. Cationic antimicrobial peptides which include cecropin also possess antiviral and fungicidal activity.
|
|
106333
|
Modified melittin peptide coding sequence
|
Resistance to diseases and pests - Bacteria, Fungi
|
|
Melittin, a small protein containing 26 amino acid residues, is the principal toxic component of bee venom. It is water-soluble as a tetramer, but it spontaneously integrates into lipid bilayers and is thought to act as a cytolytic and channel-forming antimicrobial peptide.
|
|
105053
|
Ms45 gene
|
Changes in physiology and/or production - Reproduction - Male sterility
|
Zea mays - Maize, Corn, MAIZE
|
Expression of the MS45 protein encoded by the Ms45 gene in the anther tapetum is required for the production of fertile male pollen by the maize plant. The Ms45 gene includes four exons with three introns that are removed by splicing.
|
|
105054
|
Ms45 gene terminator
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
101025
|
NADP-malic enzyme 1 gene 3’UTR and terminator
|
|
Flaveria bidentis - Coastal plain yellowtops, FLABI
|
|
|
101521
|
Napin gene promoter
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
104354
|
Napin gene promoter
|
|
Brassica rapa - Canola plant
|
|
|
104355
|
Napin gene terminator
|
|
Brassica rapa - Canola plant
|
|
|
110908
|
Napin gene terminator
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
15001
|
Neomycin Phosphotransferase II
|
Resistance to antibiotics - Kanamycin
|
Escherichia coli - ECOLX
|
The nptII (neo) gene codes for an enzyme that phosphorylates kanamycin and confers resistance to this antibiotic. Typically used as a marker gene.
|
|
111595
|
Neomycin phosphotransferase II promoter
|
|
Escherichia coli - ECOLX
|
|
|
115573
|
Neuraminidase
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
Neuraminidase (NA) catalyzes the removal of terminal sialic acid residues from viral and cellular glycoconjugates. The enzyme facilitates viral release during viral budding by cleaving terminal sialic acids on glycosylated hemagglutinin and prevent self-aggregation. NA may additionally facilitate the cell-to-cell spread of the virus by removing sialic acid residues from cell surfaces. Cleavage of sialic acid residues may also facilitate viral movement through mucus. ...
|
|
115122
|
NGAL2 transcription factor
|
Changes in physiology and/or production - Yield
|
Zea mays - Maize, Corn, MAIZE
|
NGAL2 is a transcription factor that has been shown to negatively affect the expression of the PLA1 gene. The PLA1 gene codes for a cytochrome P450 mono-oxygenase enzyme that is involved in the production of factors that control cell proliferation. By knocking out this gene the levels of PLA1 may go up resulting in altered growth characteristics, which are phenotypically shown by resulting in a significant larger leaf size and increased biomass. ...
|
|
114715
|
Nonstructural protein 1
|
|
Yellow fever virus - YFV 17D
|
Nonstructural protein 1 (NS1) plays an essential role in immune evasion, pathogenesis, and viral replication. NS1 is required for the formation of the replication complex and recruitment of other nonstructural proteins to the endoplasmic reticulum. NS1 also travels to the plasma membrane, where it is excrete as a lipoparticle and binds to macrophages and dendritic cells. NS1 inhibits Toll-like receptor 3 signal transduction.
|
|
115567
|
Nonstructural protein 1
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
|
|
114716
|
Nonstructural protein 2A
|
|
Yellow fever virus - YFV 17D
|
Nonstructural protein 2A (NS2A) is part of the replication complex that functions in virion assembly and inhibits interferon induction.
|
|
114717
|
Nonstructural protein 2B
|
|
Yellow fever virus - YFV 17D
|
Nonstructural protein 2B is an essential cofactor for the serine protease function of nonstructural protein 3.
|
|
114721
|
Nonstructural protein 3
|
|
Yellow fever virus - YFV 17D
|
Nonstructural protein 3 (NS3) has three enzymatic functions: serine protease, NTPase, and RNA helicase. NS3, along with cofactor nonstructural protein 2B, catalyzes its own autocleavage and cleaves the viral polyprotein. NS3 also functions in viral genome replication as an RNA helicase, unwinding dsRNA in the 3' to 5' direction. Likely, NS3 is involved in viral assembly, potentially interacting with other nonstructural proteins, such as nonstructural protein 2A.
|
|
114722
|
Nonstructural protein 4A
|
|
Yellow fever virus - YFV 17D
|
Nonstructural protein 4A (NS4A) regulates the ATPase activity of nonstructural protein 3, allowing for energy conservation during unwinding.
|
|
114724
|
Nonstructural protein 4B
|
|
Yellow fever virus - YFV 17D
|
Nonstructural protein 4B (NS4B) contributes to the formation of endoplasmic reticulum-derived vesicles during viral replication. Along with peptide 2K, NS4 also prevents the interferon-induced host phosphorylation of STAT1 and nuclear translocation, thereby preventing an interferon-triggered host antiviral state.
|
|
114725
|
Nonstructural protein 5
|
|
Yellow fever virus - YFV 17D
|
Nonstructural protein 5 (NS5) encodes a RNA-dependent RNA polymerase required for viral genome replication and capping of the 5' end of the viral genome. Additionally, NS5 also inhibits the interferon alpha/beta signalling pathway via the binding and inactivation of interferon-activated STAT2.
|
|
111966
|
Nopaline Synthase Enhancer
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
15171
|
Nopaline Synthase Gene
|
Selectable marker genes and reporter genes
|
Agrobacterium tumefaciens - Agrobacterium
|
Nopaline synthase is an enzyme which catalyses the synthesis of nopaline, an opine which is formed as the result of the condensation of the amino acid arginine and alpha-ketoglutaric acid. When wild-type A. tumefaciens infects a host plant, the opine synthase gene present on the T-DNA region of the Ti plasmid of the bacterium directs infected host cells to synthesize an opine, such as nopaline. The type of opine produced is specific to the particular strain of A. tumefaciens. ...
|
|
100270
|
Nopaline Synthase Gene Promoter
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
100269
|
Nopaline Synthase Gene Terminator
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
110715
|
Npro coding sequence
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Pestivirus A - BVDV-1
|
The NPro Product of Bovine Viral Diarrhea Virus Inhibits DNA Binding by Interferon Regulatory Factor 3 and Targets It for Proteasomal Degradation
|
|
115575
|
Nuclear export protein
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
Nuclear export protein (NEP) mediates the nuclear export of viral genomic RNAs, acting as an adaptor between the ribonucleoproteins (RNP; genomic RNA and nucleoprotein) and the host export machinery. The C-terminus of the protein binds to matrix protein 1 (M1), stabilizing the M1-RNP interaction. NEP may stimulate viral cRNA synthesis through the action of viral small RNAs and may recruit host F1F0 ATPase during budding.
|
|
111452
|
Nuclear inclusion protein b gene
|
Resistance to diseases and pests - Viruses - Potato virus Y (PVY)
|
Potato virus Y - PVY
|
The NIb replicase is a RNA-dependent RNA polymerase of the potato virus Y
|
|
115342
|
Nuclear localization signal
|
|
|
|
|
115571
|
Nucleoprotein
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
Nucleoprotein (NP) binds to the viral RNA genomic segments in a sequence-independent manner to form ribonucleoprotein complexes and protect the viral genome from degradation. The protein contains nuclear localization signals to allow for the import of the viral genome into the host nucleus. Due to its size, NP is not translocated into the nucleus. ...
|
|
114676
|
Nucleoside Triphosphate Translocator 1
|
Changes in physiology and/or production - Yield
Changes in quality and/or metabolite content - Carbohydrates
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
[i]Arabidopsis thaliana[/i] Nucleoside Triphosphate Translocator 1 ([i]AtNTT1[/i]) is a plastidic ATP/ADP transporter. Plant NTTs supply ATP-dependent reactions in non-photosynthetic plastids. Since starch biosynthesis is driven by hexose phosphates and ATP, [i]AtNTT1[/i] supplies the amyloplasts with ATP and contributes to starch biosynthesis.
|
|
104673
|
Octopine Synthase Gene Leader Sequence
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
100271
|
Octopine Synthase Gene Terminator
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
104820
|
Omega 5' untranslated leader
|
|
Tobacco mosaic virus - TMV
|
|
|
115640
|
Omega-3 desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Pythium irregulare
|
Omega-3 desaturase catalyzes the conversion of arachidonic acid (20:4) to eicosapentaenoic acid (20:5) by creating a double bond at the third position from the methyl end of arachidonic acid.
|
|
115643
|
Omega-3 desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Phytophthora infestans - Phytophthora blight
|
Omega-3 desaturase catalyzes the conversion of arachidonic acid (20:4) to eicosapentaenoic acid (20:5) by creating a double bond at the third position from the methyl end of arachidonic acid. Research has indicated that this enzyme converts 31% of arachidonic acid to eicosapentaenoic acid and has greater activity on C20 and C22 fatty acid substrates than on C18 substrates.
|
|
115046
|
omega-6-desaturase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
Omega-6 fatty acid desaturase is involved in the biosynthesis of linoleic (18:2) and linolenic (18:3) acids. It catalyzes the formation of a second double bond in the hydrocarbon chain of the monounsaturated fatty acid oleic (18:1) acid to produce the polyunsaturated fatty acid linoeic (18:2) acid.
|
|
103841
|
OpIE2 Promoter
|
|
Orgyia pseudotsugata multiple nucleopolyhedrovirus - OpMNPV
|
|
|
101419
|
Optimized Transit Peptide
|
|
|
|
|
104807
|
ORF1 3' Untranslated region
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
104806
|
ORF23 3' Untranslated region
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
100363
|
ORF25 PolyA Terminator sequence
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
115756
|
Oxalate oxidase
|
Resistance to diseases and pests - Fungi
|
Triticum aestivum - Wheat
|
The protein oxalate oxidase catalyzes the following reaction:
(COOH)2 + O2 = 2 CO2 + H2O2
Oxalate oxidase may have various roles in the cell. Since plants store calcium ions as calcium oxalate, oxalate oxidase may allow plants to access calcium ions during periods of stress or senescence. Influxes of calcium ions may also help sustain the oxidative burst of hydrogen peroxide related to the hypersensitive response and lignification. ...
|
|
100380
|
P45 Lactococcal promoter
|
|
Lactococcus lactis subsp. lactis - Streptococcus, Strep
|
|
|
111971
|
P7.5 early/late promoter
|
|
Vaccinia virus - Poxvirus, Smallpox vaccine, VACV, VV, Vaccinia
|
|
|
105595
|
Pal2 gene Promoter
|
|
Phaseolus vulgaris - String bean, French bean, Kidney bean, Common Bean , PHAVU
|
|
|
104682
|
Palmitoyl acyl carrier protein thioesterase 5'UTR
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
112727
|
Palmitoyl-Acyl Carrier Protein thioesterase
|
Changes in quality and/or metabolite content - Lipid and fatty acids
|
Carthamus tinctorius - Safflower, CARTI
|
Acyl-acyl carrier protein (ACP) thioesterases play an essential role in chain termination during de novo fatty acid synthesis and in the channeling of carbon flux during plant lipid biosynthesis.
|
|
115137
|
Patatin-1 3' untranslated region
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
111592
|
Pathogen-defence gene promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
108910
|
Pathogenesis-related protein 1a signal peptide
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
108712
|
Pathogenesis-related protein 1S gene
|
Resistance to diseases and pests
|
Solanum nigrum - Black nightshade, SOLNI
|
PR proteins are proteins encoded by the host plant which are specifically formed in response to pathogen attacks or comparable stress factors.
Based on their primary amino acid structure, their serological relation and/or their enzymatic or biological activities, PR proteins are classified into 14 groups.
PR proteins do not only accumulate in the leaf inoculated by the pathogen. ...
|
|
104662
|
PC1SV Promoter
|
|
Peanut chlorotic streak virus - PCSV, PClSV
|
|
|
111571
|
Pectate lyase gene
|
Changes in physiology and/or production
|
Lilium longiflorum - Easter lily, Trumpet lily, LILLO
|
Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-α-D-mann-4-enuronosyl groups at their non-reducing ends. In dong so, this leads to the destabilization of plant cell walls.
|
|
101930
|
PEMV coat protein
|
Resistance to diseases and pests - Viruses - Mosaic virus
|
Pea enation mosaic virus 1 - PEMV-1
|
The cp gene from PEMV encodes the coat protein (CP) gene from Pea enation mosaic virus. Through a process related to viral cross-protection, transgenic lines with this gene exhibit resistance to infection and subsequent disease caused by PEMV.
|
|
114723
|
Peptide 2K
|
|
Yellow fever virus - YFV 17D
|
Peptide 2K acts as a signal protein for nonstructural protein 4B (NS4B) and contributes the interferon antagonist activity of NS4B.
|
|
104813
|
Per5 3' Untranslated Region
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
106344
|
Peroxidase coding sequence
|
Resistance to diseases and pests - Fungi
|
Picea abies - Norway spruce, PICAB
|
Peroxidases are a large family of enzymes that typically catalyze the oxidation of various compounds using naturally occurring peroxides, especially hydrogen peroxide (H2O2), which are reduced, forming water.
|
|
100368
|
Peroxidase gene promoter
|
|
Triticum aestivum - Wheat
|
|
|
115630
|
Peroxiredoxin-like protein promoter
|
|
Linum usitatissimum - Flax, Flax, Linseed, LINUS
|
|
|
115634
|
Peroxiredoxin-like protein terminator
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
105055
|
Pg47 Promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
104364
|
Phaseolin 3' Terminator
|
|
Phaseolus vulgaris - String bean, French bean, Kidney bean, Common Bean , PHAVU
|
|
|
115113
|
Phloem protein 2-A14 3' untranslated region
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115111
|
Phloem protein 2-A14 promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
110061
|
Phosphate transporter gene terminator
|
|
Medicago truncatula - Barrelclover, Strong-spined medick, Barrel medic, Barrel medick, MEDTR
|
|
|
14972
|
Phosphinothricin N-acetyltransferase gene
|
Resistance to herbicides - Glufosinate
|
Streptomyces hygroscopicus - STRHY
|
The glufosinate ammonium tolerance gene ([i]bar[/i] gene), derived from the common soil bacterium [i]Streptomyces hygroscopicus[/i], codes for phosphinothricin acetyltransferase (PAT) and leads to increased tolerance to herbicides containing glufosinate ammonium, such as Basta®, Rely®, Finale®, and Liberty®. ...
|
|
15002
|
Phosphinothricin N-acetyltransferase gene
|
Resistance to herbicides - Glufosinate
|
Streptomyces viridochromogenes - STRVR
|
The pat gene codes for the enzyme phosphinothricin-acetyltransferance (PAT) and leads to increased tolerance to glufosinate-containing herbicides.
|
|
101404
|
Phosphoenolpyruvate Carboxylase gene promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
101406
|
Phosphoenolpyruvate carboxylase, intron 9
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
104350
|
Phosphofructokinase gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
Lactobacillus bulgaricus
|
Phosphofructokinase (PFK) is involved in the glycolosis chain by catalysing the conversion of fructose 6-phosphate to fructose 1,6-bisphosphate.
|
|
111088
|
Phosphoglucomutase gene, chloroplastic
|
Changes in quality and/or metabolite content - Carbohydrates
|
Solanum tuberosum - Potato, SOLTU
|
Phosphoglucomutase catalyses the interconversion of glucose-1-phosphate and glucose-6-phosphate, thereby influencing the availability of substrates for glycolosis or glycogenesis.
|
|
111087
|
Phosphoglucomutase gene, cytoplasmic
|
Changes in quality and/or metabolite content - Carbohydrates
|
Solanum tuberosum - Potato, SOLTU
|
Phosphoglucomutase catalyses the interconversion of glucose-1-phosphate and glucose-6-phosphate, thereby influencing the availability of substrates for glycolosis or glycogenesis.
|
|
15003
|
Phosphomannose Isomerase gene
|
Mannose tolerance
Selectable marker genes and reporter genes
|
Escherichia coli - ECOLX
|
Phosphomannose isomerase (PMI) catalyzes the reversible interconversion of mannose 6-phosphate and fructose 6-phosphate. Plant cells lacking this enzyme are incapable of surviving on synthetic medium containing mannose as a carbon source.
|
|
106426
|
Phosphorylase-L gene promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
105183
|
Phosphoserine aminotransferase gene
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Salmonella typhimurium - SALTM
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine.
|
|
102616
|
Photosystem II 44 kDa protein (psbC) terminator
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
109067
|
Photosystem II protein D1 gene promoter
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
15378
|
phyA gene
|
Changes in quality and/or metabolite content
Phytate degradation
|
Aspergillus niger
|
The phy gene produces a fungal 3-phytase. This enzyme can be utilized to increase the breakdown of plant phytates which bind phosphorus. Phytate is the major storage form of phosphorus in many seeds and phytate-bound phosphorus is unavailable to monogastric animals. Since monogastric animals are not able to degrade this molecule, much of the phosphorus bound to phytate passes into the environment through the manure. ...
|
|
115828
|
Phytase
|
Changes in quality and/or metabolite content
Improved digestibility/digestion
Increased phosphorous bioavailability
|
Escherichia coli - ECOLX
|
Phytases catalyze the removal of phosphate groups from phytate (phytic acid). The enzyme promotes the hydrolysis of the phosphoester bond, producing inositol and phosphate.
|
|
114966
|
Phytochome A
|
Changes in physiology and/or production - Growth rate, Photoperiod response
|
Populus tremula x Populus tremuloides - Hybrid aspen
|
PHYTOCHROME A is a regulatory photoreceptor responsible for response to red/far-red light. The protein has two forms: Pr (absorbs red light maximally) and Pfr (absorbs far-red light maximally). Photoconversion from Pr to Pfr induces morphological responses as Pfr controls the expression of gene such as: small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, and protochlorophyllide reductase. ...
|
|
114454
|
Phytochrome A
|
Changes in physiology and/or production - Growth rate, Photoperiod response
|
Avena sativa - Oat, AVESA
|
PHYTOCHROME A is a photoreceptor responsible for response to red/far-red light.
The protein is important in the de-etiolation of seedlings during emergence, preventing excessive elongation growth, sensing degree of shade, and perception of daylength. It has also been implicated in flowering time regulation and gene regulation in [i]Arabidopsis thaliana[/i].
|
|
111073
|
Phytochrome B gene
|
Changes in physiology and/or production - Yield, Growth rate, Photoperiod response
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
PhyB is a regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum (660 nm) and the Pfr form that absorbs maximally in the far-red region (730 nm). Photoconversion of Pr to Pfr induces an array of morphogenetic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes. ...
|
|
103621
|
Phytoene Desaturase gene
|
Changes in quality and/or metabolite content - Vitamins
|
Erwinia uredovora - PANAN
|
Catalyses four-step dehydrogenation reactions in the carotionoid synthesis pathway yielding lycopene.
|
|
103620
|
Phytoene Synthase 1 gene
|
Changes in quality and/or metabolite content - Vitamins
|
Zea mays - Maize, Corn, MAIZE
|
Phytoene synthase is a transferase enzyme involved in the biosynthesis of carotenoids. It catalyzes the conversion of geranylgeranyl pyrophosphate to phytoene
|
|
111933
|
Phytoene synthase gene
|
Changes in quality and/or metabolite content - Vitamins
|
Citrus unshiu - Satsuma mandarin, Satsuma orange, Tangerine, CITUN
|
Phytoene Synthase is a transferase enzyme involved in the biosynthesis of carotenoids. It catalyzes the conversion of geranylgeranyl pyrophosphate to phytoene.
|
|
105062
|
Phytoene Synthase gene
|
Changes in quality and/or metabolite content - Vitamins
|
Narcissus pseudonarcissus - Wild daffodil, Lent lily, Daffodil, NARPS
|
Phytoene Synthase is a transferase enzyme involved in the biosynthesis of carotenoids. It catalyzes the conversion of geranylgeranyl pyrophosphate to phytoene.
|
|
41317
|
Phytophthora infestans Resistance gene 1
|
Resistance to diseases and pests - Fungi
|
Solanum bulbocastaneum - Nightshade, Ornamental nightshade
|
The Resistance gene is a member of the NBS-LRR (Nucleotide Binding Site - Leucine Rich Repeat) class and codes for a protein that recognise specific proteins - termed elicitor proteins - of Phytophthora infestans the causing agent of late-blight disease. ...
|
|
102164
|
Phytophthora infestans Resistance gene 1
|
Resistance to diseases and pests - Fungi
|
Solanum stoloniferum - Wild potato
|
The Resistance gene is a member of the NBS-LRR (Nucleotide Binding Site - Leucine Rich Repeat) class and codes for a protein that recognise specific proteins - termed elicitor proteins - of Phytophthora infestans the causing agent of late-blight disease. ...
|
|
102155
|
Phytophthora infestans Resistance gene 1
|
Resistance to diseases and pests - Fungi
|
Solanum venturii - Wild Potato, SOLVN
|
The Resistance gene is a member of the NBS-LRR (Nucleotide Binding Site – Leucine Rich Repeat) class and codes for a protein that recognise specific proteins – termed elicitor proteins - of Phytophthora infestans the causing agent of late-blight disease. ...
|
|
103777
|
Phytophthora infestans Resistance gene 1 Promoter
|
|
Solanum bulbocastaneum - Nightshade, Ornamental nightshade
|
|
|
109062
|
Phytophthora infestans Resistance gene 1 Promoter
|
|
Solanum venturii - Wild Potato, SOLVN
|
|
|
109063
|
Phytophthora infestans Resistance gene 1 terminator
|
|
Solanum venturii - Wild Potato, SOLVN
|
|
|
103778
|
Phytophthora infestans Resistance gene 1 Terminator
|
|
Solanum bulbocastaneum - Nightshade, Ornamental nightshade
|
|
|
41318
|
Phytophthora infestans Resistance gene 2
|
Resistance to diseases and pests - Phytophthora infestans resistance
|
Solanum bulbocastaneum - Nightshade, Ornamental nightshade
|
The Resistance gene is a member of the NBS-LRR (Nucleotide Binding Site - Leucine Rich Repeat) class and codes for a protein that recognise specific proteins - termed elicitor proteins - of Phytophthora infestans the causing agent of late-blight disease. ...
|
|
103775
|
Phytophthora infestans Resistance gene 2 Promoter
|
|
Solanum bulbocastaneum - Nightshade, Ornamental nightshade
|
|
|
103776
|
Phytophthora infestans Resistance gene 2 Terminator
|
|
Solanum bulbocastaneum - Nightshade, Ornamental nightshade
|
|
|
115246
|
piggyBac
|
|
Trichoplusia ni - Cabbage looper, Cabbage looper moth, Cabbage plusia, Common cabbage looper, Lettuce looper
|
|
|
108876
|
pIIG gene promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
103650
|
PK Protein Kinase
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Suid alphaherpesvirus 1 - SHV-1
|
The mechanism by which PK affects virulence is unknown. Although purified PK can phosphorylate a major viral protein in vitro which is also phosphorylated in vivo, the physiological substrate and function of PK are unknown.
|
|
111316
|
Plasma membrane ATPase 1 gene
|
Changes in physiology and/or production - Yield, Growth rate
|
Saccharomyces cerevisiae - Yeast, YEASX
|
The plasma membrane ATPase of plants and fungi functions as a hydrogen ion pump. It generates a proton gradient which drives the active transport of nutrients through proton co-transport.
The resulting external acidification and/or internal alkinization may mediate growth responses.
|
|
111317
|
Plasma membrane ATPase 2 gene
|
Changes in physiology and/or production - Yield, Growth rate
|
Solanum tuberosum - Potato, SOLTU
|
The plasma membrane ATPase of plants and fungi functions as a hydrogen ion pump. It generates a proton gradient which drives the active transport of nutrients through proton co-transport.
The resulting external acidification and/or internal alkinization may mediate growth responses.
|
|
110674
|
Plastidic nucleotide transporter gene
|
Changes in physiology and/or production - Yield
Changes in quality and/or metabolite content - Carbohydrates
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
The ntt gene from Arabidopsis thaliana codes for a plastidic nucleotide translocator. It catalyses the uptake of ATP into a plastid in exchange for ADP.
Its main function is to supply non-green storage plastids with ATP, which is needed to facilitate starch synthesis.
|
|
107955
|
Plastochron 1
|
Changes in physiology and/or production - Yield, Growth rate, Reproduction
Tolerance to abiotic stress - Cold / Heat, Drought
|
Zea mays - Maize, Corn, MAIZE
|
PLASTOCHRON1 is a cytochrome P450 mono-oxygenase and functions as a gibberellin-independent control of cell division timing. [i]In vitro[/i] CYP78A1 catalyzes the omega-hydroxylation of the fatty acid lauric acid. In particular, PLA1 controls leaf initiation and vegetative growth. Overexpression of PLA1 in [i]Zea mays[/i] changed the architecture of the plant and produced dramatically larger leaves by increasing cell division duration. ...
|
|
103751
|
PLRV Coat Protein
|
Resistance to diseases and pests - Viruses - Potato leaf roll virus (PLRV)
|
Potato leafroll virus - PLRV
|
The coat protein (CP) of luteoviruses, such as PLRV, is reported to be responsible for many viral characteristics including serological properties, transmission specificity, cross-protection and mutual exclusion.
|
|
104847
|
PLRV Replicase gene
|
Resistance to diseases and pests - Viruses - Potato leaf roll virus (PLRV)
|
Potato leafroll virus - PLRV
|
The PLRVrep gene comprises of the two overlapping ORF1 and ORF2 sequence of the PLRV genome which together encode a full length 110kD PLRV replicase protein.
The ORF1 gene encodes the putative viral replicase domain that is required for viral RNA synthesis. The ORF2 gene encodes the putative viral helicase domain that is required for viral RNA synthesis.
|
|
111872
|
pMB1 origin of replication
|
|
Escherichia coli - ECOLX
|
|
|
114439
|
pMB4 intervening sequence
|
|
|
|
|
101412
|
pMc5-8 plasmid vector
|
|
|
|
|
116155
|
Pol polyprotein
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Human immunodeficiency virus 1 - HIV-1
|
HIV-1 gag-pol precursor (p160) contains the necessary proteins for viral replication; protease, RNase, reverse transcriptase, and integrase. Naturally, the Gag-pol precursor is generated from a ribosomal frameshift to the [i]pol[/i] reading frame 5% of the time. During viral maturation, the virally encoded protease cleaves the Pol polypeptide away from Gag and further digests it to separate the protease (p10), reverse transcriptase (RT; p50), RNase H (p15), and integrase (p31). ...
|
|
15015
|
Polygalacturonase gene
|
Changes in physiology and/or production - Ripening
|
Solanum lycopersicum - Tomato, SOLLC
|
The polygalacturonase gene encodes the polygalacturonase (PG) enzyme, which is responsible for the breakdown of cell wall pectin during the softening of fruits that takes place during ripening.
Pectin is a building block in plant cell walls and is what gives fruits their firmness. Fruits with reduced PG activity have a slower cell wall breakdown, higher viscosity and delayed softening.
|
|
115568
|
Polymerase acidic protein
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
The polymerase acidic protein (PA) complexes with polymerase basic protein 1 and 2 to form an RNA-dependent RNA polymerase. PA is essential for the formation of the RNA polymerase and for viral replication. The complex primes transcription of viral RNA through a mechanism termed cap snatching, where the 5' ends (10 to 15 nucleotides) of host pre-mRNAs are removed. PA is thought to act as the endonuclease that cleaves the host pre-mRNAs. ...
|
|
115569
|
Polymerase basic protein 1
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
Polymerase basic protein 1 (PB1) complexes with polymerase acidic protein (PA) and polymerase basic protein 2 to form an RNA-dependent RNA polymerase. Transcription of viral mRNA occurs through a mechanism termed cap snatching, where the 5' methylated end (10 to 15 nucleotides) of the host pre-mRNAs is cleaved by PA and used for viral transcription. PB1 comprises the catalytic core of the polymerase and is responsible for RNA synthesis activity. ...
|
|
115570
|
Polymerase basic protein 2
|
|
Influenza A virus - Influenza, Flu, Avian flu, Human flu, Swine influenza, Equine influenza, Bird flu
|
Polymerase basic protein 2 (PB2) complexes with polymerase basic protein 1 and polymerase acidic protein (PA) to form an RNA-dependent RNA polymerase complex. During transcription, PB2 binds the 5′,7-methylguanosine cap of the host pre-mRNA, which will be subsequently cleaved by PA. PB2 also inhibits type I interferon induction through interaction with and inhibition of the host mitochondrial antiviral signalling protein MAVS.
|
|
115582
|
Polymerase I terminator
|
|
Mus musculus - Mouse, House mouse, MOUSE
|
|
|
106424
|
Polyphenol oxidase 5 gene
|
Changes in quality and/or metabolite content - Pigmentation / Coloration
|
Solanum verrucosum - SOLVR
|
The PPO enzyme family catalyses the o-hydroxylation of monophenol molecules in which the benzene ring contains a single hydroxyl substituent) to o-diphenols (phenol molecules containing two hydroxyl substituents). It can also further catalyse the oxidation of o-diphenols to produce o-quinones.
PPO causes the rapid polymerization of o-quinones to produce black, brown or red pigments (polyphenols) that cause fruit browning
|
|
111327
|
Polyphosphate kinase gene
|
Changes in physiology and/or production - Yield
|
Escherichia coli - ECOLX
|
Polyphosphate kinase catalyzes the reversible transfer of the terminal phosphate of ATP to a long-chain polyphosphate.
Among other functions, the polyphosphate moieties serve as a form of chemical energy storage during a cell's high energy status.
|
|
104802
|
Polyubiquitin10 gene promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
110663
|
Potato type II proteinase inhibitor, PIN2B
|
Resistance to diseases and pests - Insects
|
Solanum nigrum - Black nightshade, SOLNI
|
Plants produce proteinase inhibitors (PIN) as a strategy to protect themselves against the damage caused by herbivorous insects.
|
|
110662
|
Potato type II proteinase inhibitor, PINI
|
Resistance to diseases and pests - Insects
|
Solanum nigrum - Black nightshade, SOLNI
|
Plants produce proteinase inhibitors (PIN) as a strategy to protect themselves against the damage caused by herbivorous insects.
|
|
106414
|
PPO Suppression Transgene
|
|
Malus domestica - Apple, MALDO
|
|
|
104309
|
PPV coat protein
|
Resistance to diseases and pests - Viruses
|
Plum pox virus - PPV, Sharka
|
The cp gene from PPV encodes the coat protein (CP) gene from Plum Pox Virus. Through a process related to viral cross-protection, transgenic lines with this gene exhibit resistance to infection and subsequent disease caused by PPV.
|
|
116052
|
Predicted calmodulin 5 gene intron
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
114713
|
pre-membrane protein
|
|
Japanese encephalitis virus - JEV SA14-14-2
|
The pre-membrane protein (prM) is a caperone protein for the envelope protein during intracellular protein assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the host Golgi. prM (nucleotide positions 477..977) contains the sequence for small envelope protein M/matrix protein M (nucleotide positions 753..977), which has a role in viral budding and activation of mitochondrial apoptotic pathway via M ectodomain.
|
|
115179
|
PRODUCTION OF ANTHOCYANIN PIGMENT 1
|
Changes in quality and/or metabolite content - Pigmentation / Coloration, Flavonoids (e.g. anthocyanin)
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
PRODUCTION OF ANTHOCYANIN PIGMENT 1 encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. PAP1 promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins and proanthocyanidin, probably together with GL3 and BHLH2. Additionally, PAP1 was demonstrated to interact with JAZ proteins to regulate anthocyanin accumulation and is essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.
|
|
110670
|
Prosystemin gene
|
Resistance to diseases and pests
|
Solanum nigrum - Black nightshade, SOLNI
|
The systemin precursor (Prosystemin) is a 200 amino acid peptide precursor of Systemin. The active form of Systemin is an 18 amino acid plant peptide hormone involved in the wound response to herbivore and pathogen attacks in the Solanaceae family.
|
|
108283
|
Protamine 1 coding sequence
|
Production of medical or pharmaceutical compounds (human or animal)
|
Homo sapiens - HUMAN
|
Protamines are polycationic, highly basic polypeptides that bind to DNA and substitute for the somatic histones and transition proteins required for spermatogenesis in vertebrates.
The highly positively charged nature of protamines allows them to electrostatically bind to the negatively charged heparin molecules there fore neutralizing the anticoagulant effects of heparin following cardiovascular surgery.
|
|
111083
|
Protein 17 coding sequence
|
Resistance to diseases and pests - Viruses - Potato leaf roll virus (PLRV), Potato virus Y (PVY)
|
Potato leafroll virus - PLRV
|
The pr17 gene of potato leafroll virus codes for a 17-kDa protein that is a putative movement protein for the phloem-limited luteovirus.
|
|
104338
|
Proteinase inhibitor II gene
|
Resistance to diseases and pests
|
Solanum tuberosum - Potato, SOLTU
|
Plant protease inhibitors such as PinII have been proposed to function as part of the plant defense system. Protease inhibitors are abundant proteins in the storage organs and seeds of plants In addition, their synthesis is induced to high levels in response to stress, infection and wounding.
|
|
100367
|
Proteinase inhibitor II gene terminator
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
110883
|
Proteinase inhibitor II transit peptide
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
15026
|
PRSV coat protein
|
Resistance to diseases and pests - Papaya ringspot potyvirus resistance
|
Papaya ringspot virus - PRSV
|
The cp gene from PRSV encodes the coat protein (CP) gene from Papaya ringspot virus. Through a process related to viral cross-protection, transgenic lines with this gene exhibit resistance to infection and subsequent disease caused by PRSV.
|
|
101021
|
Ps7s7
|
|
Subterranean clover stunt virus - SCSV, Subterranean clover stunt virus
|
|
|
101940
|
PSbMV coat protein
|
Resistance to diseases and pests - Viruses
|
Pea seed-borne mosaic virus - PSbMV
|
The cp gene from PSbMV encodes the coat protein (CP) gene from Pea Seed-borne Mosaic Virus coat protein. Through a process related to viral cross-protection, transgenic lines with this gene exhibit resistance to infection and subsequent disease caused by PSbMV.
|
|
103097
|
PsbY transit peptide
|
|
Spinacia oleracea - Spinach, SPIOL
|
|
|
101407
|
pTA29 pollen specific promoter
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
101408
|
P-tac promoter
|
|
|
|
|
101411
|
pUC origin of replication
|
|
|
|
|
101410
|
pUC19 plasmid
|
|
|
|
|
116054
|
Putative gene of the mannose-binding protein superfamily terminator
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
15020
|
PVY coat protein
|
Resistance to diseases and pests - Viruses - Potato virus Y (PVY)
|
Potato virus Y - PVY
|
The cp gene from PVY encodes the coat protein (CP) gene from Potato virus Y strain O. Through a process related to viral cross-protection, transgenic lines with this gene exhibit resistance to infection and subsequent disease caused by PVY.
|
|
103123
|
Pyruvate orthophosphate dikinase, Intron 3
|
|
Flaveria trinervia - Clustered Yellowtops, speedyweed, flaveria, yellow twinstem
|
|
|
15416
|
Quinolinic Acid Phosphoribosyltransferase gene
|
Reduced nicotine content
|
Nicotiana tabacum - Tobacco, TOBAC
|
The NtQPT1 gene codes for quinolinic acid phosphoribosyltransferase (QPTase). This enzyme is responsible for the production of nicotinic acid, a nicotine precursor.
|
|
104448
|
Quinolinic Acid Phosphoribosyltransferase gene Promoter
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
115849
|
R-2,4-dichlorophenoxypropionate dioxygenase
|
Resistance to herbicides
Tolerance to 2,4-dichlorophenoxyacetic acid
Tolerance to quizalofop
|
Sphingobium herbicidovorans - SPHHE
|
The [i]Sphingobium herbicidovorans[/i] R-2,4-dichlorophenoxypropionate dioxygenase was engineered to have increased thermostability and enzymatic activity. The enzyme inactivates quizalofop (active against monocots) and 2,4-dichlorophenoxyacetic acid herbicides using α-ketoglutarate and molecular oxygen to produce the inactivated herbicide, succinate and carbon dioxide. The enzyme may also act on other aryloxyphenoxypropionate and synthetic auxin herbicides.
|
|
111529
|
RA5B gene terminator
|
|
Oryza sativa - Rice, ORYSA
|
|
|
100344
|
Rabies Glycoprotein
|
Resistance to diseases and pests - Viruses
|
Rabies lyssavirus - Rabies virus
|
The rabies virus glycoprotein (G) forms surface projections through the viral lipid envelope and is the only protein capable of inducing and reacting with virus-neutralizing antibody. IDuring virus uptake by the host cell, G must interact efficiently with cell surface receptors that can mediate rapid internalization of the virus.
|
|
104795
|
RB7 matrix attachment region
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
102611
|
rbcL ribosomal binding site
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
This is the ribosome binding site of the large subunit of a multimeric enzyme (RuBisCo) involved in photosynthesis. A ribosomal binding site (RBS) is a sequence on mRNA that is bound by the ribosome when initiating protein translation.
|
|
110887
|
rbcS promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
100349
|
rbcS Promoter
|
|
Helianthus annuus - Sunflower, HELAN
|
|
|
103851
|
rbcS Promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
103853
|
rbcS Terminator
|
|
Nicotiana tabacum - Tobacco, TOBAC
|
|
|
103616
|
rbcS Transit Peptide
|
|
Pisum sativum - Garden pea, PEA
|
|
|
101902
|
rbcS Transit Peptide
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
101877
|
rbcS-E9 gene terminator
|
|
Pisum sativum - Garden pea, PEA
|
|
|
114683
|
Recombinant glycolate dehydrogenase (fused subunits DEF)
|
Changes in physiology and/or production - Yield
Changes in quality and/or metabolite content - Carbohydrates
Changes to photosynthesis and photorespiration
Tolerance to abiotic stress - Cold / Heat
|
Escherichia coli - ECOLX
|
Glycolate dehydrogenase converts 2-phosphoglycolate to glycerate and CO2. In plant biotechnology applications, the enzyme can be used used to increase photosynthetic rates by reducing the the toxic effects of photorespiration (Ribulose-1,5-bisphosphate-caboxylase/-oxygenase (Rubisco) to binding O2 instead of CO2). ...
|
|
108043
|
Recombinant human lactoferrin coding sequence
|
Production of medical or pharmaceutical compounds (human or animal)
|
Homo sapiens - HUMAN
|
Lactoferrin is an iron-binding glycoprotein of the transferrin family, first isolated from milk but also found in most exocrine secretions as well as in the secondary granules of neutrophils. The many reports on its antimicrobial and antiinflammatory activityin vitro identify lactoferrin as important in host defense against infection and excessive inflammation. ...
|
|
111602
|
Recombinase A gene
|
Changes in physiology and/or production - Growth rate
|
Sinorhizobium meliloti - RHIML
|
Recombinase A (RecA) plays a central role in natural recombination processes, DNA repair processes and the control of gene expression following DNA damage.
|
|
103740
|
Red Fluorescent Protein gene
|
Selectable marker genes and reporter genes
|
Discosoma sp. - Coral anemones, Sea anemones
|
The red fluorescent protein (RFP) is a protein that exhibits bright red fluorescence when exposed to light in the blue to ultraviolet range
|
|
114697
|
Replication Associated Gene
|
Resistance to diseases and pests - Viruses
|
African cassava mosaic virus - ACMV
|
The AC1 protein is essential of the replication of the viral single stranded DNA (ssDNA) through rolling circle amplification via the recruitment of a cellular DNA polymerase. AC1 functions as a helicase and also cleaves DNA during replication of the viral genome.
|
|
111747
|
Ribosome-inactivating protein I gene
|
Resistance to diseases and pests - Fungi
|
Hordeum vulgare - Barley, HORVU
|
Protein synthesis inhibitor I inhibits the elongation phase of protein synthesis. It effectively inactivates fungal ribosomes and is thought to function as a constitutive antifungal agent in plants.
|
|
114703
|
Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit 2B promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
114684
|
Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit 3B promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
100364
|
Rice actin 1 gene promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
100355
|
Rice actin 1, intron
|
|
Oryza sativa - Rice, ORYSA
|
|
|
111530
|
Rice actin 1, leader sequence
|
|
Oryza sativa - Rice, ORYSA
|
|
|
110886
|
Root locus C gene
|
Changes in physiology and/or production
|
Agrobacterium rhizogenes - AGRRH
|
The cytokinin-beta-glucosidase encoded by rolC hydrolyses cytokinin-glucosides, releasing active forms of cytokinin.
|
|
111296
|
Root locus C promoter
|
|
Agrobacterium rhizogenes - AGRRH
|
|
|
100381
|
rrnB Terminator
|
|
Escherichia coli - ECOLX
|
|
|
103768
|
RuBisCO small subunit gene 5'UTR
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
104632
|
RuBisCo SSU Terminator
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
101870
|
RZM Genetic Element
|
Resistance to diseases and pests - Viruses - Beet necrotic yellow virus (BNYV)
|
Beet necrotic yellow vein virus - BNYVV
|
RNA 1 encodes the RNA dependent RNA polymerase (RdRp) or replicase protein responsible for the propagation of Beet Necrotic Yellow Vein Virus (BNYVV).
The RZM genetic element is the inverted repeat of a part of the RNA-1 gene transcript of the BNYVV.
In plants carrying the RZM gene, it confers resistance to Rhizomania disease caused by BNYVV by disrupting the replication process of the virus thus leading to a reduction in the development of the virus in the plant.
|
|
15017
|
S-adenosylmethionine hydrolase gene
|
Changes in physiology and/or production - Ripening
|
Bacteriophage T3 - Phage T3, T3
|
The SAMase gene encodes S-adenosylmethionine (SAM) hydrolase which is capable of degrading and thus reducing SAM. The conversion of SAM to 1-aminocyclopropane-1-carboxylic acid (ACC) is the first step in ethylene biosynthesis and the lack of sufficient pools of SAM results in significantly reduced synthesis of this phytohormone, which is known to play a key role in fruit ripening.
|
|
103895
|
SAMS Promoter
|
|
Glycine max - Soybean, Soya bean, Soya, SOYBN
|
|
|
104818
|
SCP1 promoter
|
|
|
|
|
115341
|
Scraps intron
|
|
Drosophila melanogaster - Common Fruit Fly
|
|
|
114438
|
SCSV1 promoter
|
|
Subterranean clover stunt virus - SCSV, Subterranean clover stunt virus
|
|
|
114440
|
SCSV3 terminator
|
|
Subterranean clover stunt virus - SCSV, Subterranean clover stunt virus
|
|
|
102033
|
SEKDEL ER retention signal
|
|
|
|
|
111570
|
Serine acetyltransferase gene
|
Changes in quality and/or metabolite content - Antioxidants
Tolerance to abiotic stress
|
Escherichia coli - ECOLX
|
Serine acetyltransferases catalyse the production of cysteine and glutathion in the chloroplast.
In plants, glutathion plays an essential role in the manargement of biotic and abiotic stress, like for example the tolerance to heavy metals and the pathogen defense response.
|
|
101929
|
Serine protease inhibitor gene
|
Resistance to diseases and pests - Fungi
|
Galleria mellonella - Wax moth, Honeycomb Moth
|
Gene expression is induced during humoral immune response of Galleria mellonella against fungal pathogens.
|
|
115638
|
SETL promoter
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
115641
|
SETL terminator
|
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
|
|
115343
|
Sex-specific splicing module
|
|
Aedes aegypti - Yellow fever mosquito, AEDAE
|
|
|
104313
|
Silk Proteinase Inhibitor 2
|
Resistance to diseases and pests - Bacteria, Fungi
|
Galleria mellonella - Wax moth, Honeycomb Moth
|
Silk Proteinase Inhibitor 2 (SPI 2) is a Kazal-type serine protease inhibitor that was identified within the silk of [i]Galleria mellonella[/i]. Based on its effect on bacterial and fungal proteinases, and on the developmental profile of its production, it is assumed that it protects silk proteins from microbial destruction.
|
|
101519
|
Sinapoylglucose:choline sinapoyltransferase
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
In oilseed rape plants Sinapoylglucose:choline sinapoyltransferase (SCT) catalyses the conversion of sinapoylglucose to sinapoyl-choline (sinapine).
A number of plant components like sinapic acid esters restrict the use of oilseed rape products in human and animal nutrition. In oilseed rape these compounds are present in much higher concentrations than in other oil-rich seeds, which accounts for the bitter taste and astringency of oilseed rape products. ...
|
|
103024
|
Single-chain Fragment variable (scFv) antibody BA11
|
Production of medical or pharmaceutical compounds (human or animal) - Antibodies and antigens
|
Mus musculus - Mouse, House mouse, MOUSE
|
The single chain antibody scFv BA11 is a synthetic molecule comprised from the variable fragments of a complete IgG antibody which are linked by a synthetic peptide through phage display-technology. The scFv BA11 antibody targets F4-fimbria of enterotoxigenic Escherichia coli (ETEC) cells that attach to the intestinal wall of pigs and might cause diarrhea.
|
|
105733
|
Slow Anion Channel-Associated 1 gene
|
Tolerance to abiotic stress
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
The plasma membrane protein SLAC1 is essential for stomatal closure in response to CO2, abscisic acid, ozone, light/dark transitions, humidity change, calcium ions, hydrogen peroxide and nitric oxide.
|
|
116053
|
Smooth septate junction protein 1
|
|
Diabrotica virgifera virgifera - Western corn rootworm, DIAVI
|
|
|
108875
|
Snf7 coding sequence
|
Resistance to diseases and pests - Insects - Coleoptera (beetles) - Western corn rootworm (Diabrotica virgifera)
|
Diabrotica virgifera virgifera - Western corn rootworm, DIAVI
|
The WCR Snf7 ortholog (DvSnf7) is a component of the ESCRT-III complex (endosomal sorting complex required for transport), which is involved in essential biological processes including sorting of cell membrane receptors.
|
|
114675
|
Solanum tuberosum Soluble Starch Synthase 3 promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
103626
|
Sorghum bicolor legumin protein Terminator
|
|
Sorghum bicolor - Sorghum
|
|
|
115073
|
Spacer sequence
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
115074
|
Spacer sequence
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
101520
|
Stilbene Synthase
|
Changes in quality and/or metabolite content - Antioxidants, Flavonoids (e.g. anthocyanin)
Resistance to diseases and pests - Fungi
Tolerance to abiotic stress
|
Vitis vinifera - Grape Vine
|
Stilbene synthase catalyses the conversion of p-Cumaroyl-CoA to resveratrol.
Resveratrol (3,5,4-trihydroxy-trans-stilbene) belongs to the flavonoid group of compounds and is classed among the phytoalexins.Phytoalexins are a class of antibiotic polyphenol compounds that form part of the plant defence system. Resveratrol was first identified and isolated from Japanese knotweed plants, but it is also present in grapevine (Vitis vinifera), pine, linseed, sesame seed and peanuts. ...
|
|
103887
|
Stilbene Synthase Terminator
|
|
Vitis vinifera - Grape Vine
|
|
|
48458
|
Stomatal density and distribution 1 gene
|
Tolerance to abiotic stress - Drought
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
The gene product of the sdd1-gene (stomatal density and distribution), SDD1 is a subtilisin-like serine protease, which evidently functions as a negative regulator of guard cell development.
The overexpression of SDD1 in transgenic Arabidopsis thaliana causes a reduction of guard cell density to approximately 40% of the wild type.
|
|
48460
|
Stomatal density and distribution 1 gene
|
Tolerance to abiotic stress - Drought
|
Solanum tuberosum - Potato, SOLTU
|
The gene product of the sdd1 gene (stomatal density and distribution), SDD1 is a subtilisin-like serine protease, which evidently functions as a negative regulator of guard cell development.
The overexpression of SDD1 in transgenic Arabidopsis thaliana causes a reduction of guard cell density to approximately 40% of the wild type.
|
|
110606
|
Stopper Sequence
|
|
|
|
|
109045
|
Strawberry vein banding virus promoter
|
|
Strawberry vein banding virus - SVBV
|
|
|
107864
|
Sucrose Invertase 2 gene
|
Use in industrial applications - Biofuel production
|
Saccharomyces cerevisiae - Yeast, YEASX
|
The SUC2 gene of the yeast [i]Saccharomyces cerevisiae[/i] encodes the secreted enzyme invertase, which hydrolyses sucrose and raffinose.
|
|
110884
|
Sucrose isomerase gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
Erwinia rhapontici - ERWRD
|
Sucrose isomerases (SI) convert sucrose into varying isomers. The SI described here converts sucrose into its isomer isomaltulose (brand name palatinose, 6-O-α-D-glucopyranosyl-D-fructose).
|
|
111322
|
Sucrose synthase gene
|
Changes in physiology and/or production - Yield
|
Solanum tuberosum - Potato, SOLTU
|
Sucrose synthase reversibly catalyzes sucrose synthesis from, and cleavage to NDP-glucose and fructose.
|
|
101594
|
Sucrose transporter gene
|
Changes in physiology and/or production - Yield
Changes in quality and/or metabolite content - Carbohydrates
|
Hordeum vulgare - Barley, HORVU
|
The HvSUT1 gene encodes a membrane transport protein which mediates the energy-dependent transport of saccharose (sucrose) across cell membranes against a concentration gradient. Sucrose transporters are thought to be among the basic components of all higher plants, since saccharose is the universal transport form of all photoassimilates. ...
|
|
111323
|
Sucrose transporter gene
|
Changes in physiology and/or production - Yield
|
Spinacia oleracea - Spinach, SPIOL
|
The sucrose transporter is responsible for the loading of sucrose into the phloem. This enables the transport of carbons from photosynthetic tissues to non-photosynthetic tissues in plants.
|
|
102882
|
Sucrose transporter promoter
|
|
Hordeum vulgare - Barley, HORVU
|
|
|
46095
|
Sucrose:sucrose 1-fructosyl transferase gene
|
Increased inulin
|
Helianthus tuberosus - Sunflower, Jerusalem artichokes , Sunroot, Sunchoke
|
Involved in inulin biosynthesis by catalysing the synthesis of trisaccharide 1-kestose from two molecules of sucrose, thereby releasing glucose.
|
|
115287
|
sucrose-binding protein promoter
|
|
Vicia faba - Broad Bean, Tick Bean, Windsor Bean, Horse Bean, Pigeon Bean, Field Bean
|
|
|
111065
|
Sucrose-sucrose-1-fructosyltransferase gene
|
Changes in quality and/or metabolite content - Carbohydrates
|
Cynara cardunculus var. scolymus - Artichoke, Globe artichoke, CYNCS
|
The sucrose-sucrose-1-fructosyltransferase (SST) from [i]C. scolymus[/i] is an enzyme involved in fructan metabolism. It catalyses the synthesis of 1-kestose, a trisaccharide, from sucrose.
|
|
114748
|
SV40 poly-adenylation signal
|
|
Macaca mulatta polyomavirus 1 - SV40, Simian vacuolating virus 40, simian virus 40, Rhesus macaque polyomavirus
|
|
|
103217
|
Synthetic cry1C gene
|
Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths) - Fall armyworm (Spodoptera frugiperda)
|
|
Spodoptera insect pest control
|
|
103553
|
Synthetic elastin-like protein
|
Production of medical or pharmaceutical compounds (human or animal)
Use in industrial applications
|
|
Elastin is a structural protein found in mammals that confers elasticity to connective tissues. Examples for the function of elastin are the elasticity of big blood vessels such as the aorta or the dimensional stability of pulmonary alveolis. Elastin is made up of two domain types: A hydrophobic domain consisting of repeats of oligopeptides rich in glycin, alanine, valine and proline alternating with a hydrophilic domain that also incorporates lysine residues. ...
|
|
105606
|
Synthetic Minimal Plant promoter
|
|
|
|
|
48457
|
Synthetic spider silk protein coding sequence
|
Use in industrial applications
|
Nephila clavipes - Golden silk orbweaver spider
|
The SO1 gene comprises the repetitive part of the naturally occuring MaSpl gene; The 3´-localised non-repetitive sequence of approximately 180 bp was removed from SO1.
The genes MaSpI and MaSpII encode the spider silk proteins in the dragline core fibre of the golden silk orbweaver spider Nephila clavipes.
For more information on MaSpI and MaSpII see BCH records: 48455 and 48456
|
|
103758
|
telAB gene
|
Selectable marker genes and reporter genes
|
Enterobacter aerogenes - Enterobacter
|
This gene, along with kilA, confers resistance to the chemical compound potassium tellurite (K2TeO3). The use of this gene as marker was developed to suit strains that were aimed to be released in field trials, where it is not desirable to use antibiotic resistance genes as marker tools for tracking the bacteria. Makes selective plating on potassium tellurite possible.
|
|
113224
|
Telomerase reverse transcriptase gene promoter
|
|
Homo sapiens - HUMAN
|
|
|
115235
|
Terminal Invert Repeat
|
|
Trichoplusia ni - Cabbage looper, Cabbage looper moth, Cabbage plusia, Common cabbage looper, Lettuce looper
|
|
|
105038
|
Tetracycline Operator
|
|
Escherichia coli - ECOLX
|
|
|
101475
|
Tetracycline-controlled transactivator
|
Conditional lethality
|
Escherichia coli - ECOLX
|
Tetracycline-controlled transactivator (tTAV) is a synthetic protein coding sequence based on a fusion of sequences from Escherichia coli and Herpes simplex virus (VP16 transcriptional activator). ...
|
|
111930
|
Tetrameric ubiquitin gene promoter
|
|
Ananas comosus - Pineapple, ANACO
|
|
|
111934
|
Tetrameric ubiquitin gene terminator
|
|
Ananas comosus - Pineapple, ANACO
|
|
|
104664
|
TEV 5' Untranslated Region
|
|
Tobacco etch virus - TEV
|
|
|
15005
|
Thioesterase
|
Production of medical or pharmaceutical compounds (human or animal) - Omega-3 fatty acids (e.g. DHA)
|
Umbellularia californica - Laurel, California Bay Laurel, UMBCA
|
The TE gene codes for the enzyme 12:0 ACP thioesterase which is active in the fatty acid biosynthetic pathway of developing seeds and causes the accumulation of triacylglycerides containing esterified lauric acid and, to a lesser extent, myristic acid.
|
|
111085
|
Threonine synthase gene
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Solanum tuberosum - Potato, SOLTU
|
The chloroplast-localized threonine synthase is involved in amino-acid biosynthesis. It catalyses the irreversible conversion of homoserine into threonine.
|
|
103753
|
Thylakoid membrane protein gene promoter
|
|
Amaranthus hybridus - Slim Amaranth, Green Amaranth, Pigweed
|
|
|
101415
|
Ti plasmid left border repeat
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
101416
|
Ti plasmid right border repeat
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
103750
|
Tilapia Growth Hormone gene
|
Changes in physiology and/or production - Growth rate
|
Oreochromis hornorum x Oreochromis aureus - Hybrid tilapia
|
Growth hormone (GH) is a peptide hormone that stimulates growth, cell reproduction and regeneration in humans and other animals.
|
|
108703
|
TMV 35s promoter
|
|
Tobacco mosaic virus - TMV
|
|
|
114686
|
Tonoplast Monosaccharide Transporter 1
|
Altered photosynthesis
Changes in physiology and/or production - Yield, Growth rate, Photoperiod response
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
[i]Arabidopsis thaliana Tonoplast Monosaccharide Transporter 1[/i] ([i]AtTMT1[/i]) encodes a membrane protein, responsible for transferring glucose from the plant cytosol into the vacuolar compartment. ...
|
|
115906
|
Topoisomerase
|
|
Pisum sativum - Garden pea, PEA
|
Topoisomerases control the supercoiling of DNA.
|
|
103067
|
Transcript 7 gene 3' untranslated region
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
103642
|
Transcription termination factor
|
|
pSVL plasmid
|
|
|
100360
|
Transit peptide and first intron of Rubisco SSU
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
114455
|
Transit peptide and first intron of Rubisco SSU
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
106440
|
Trypsin Modulating Oostatic Factor gene
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Aedes aegypti - Yellow fever mosquito, AEDAE
|
Trypsin-modulating oostatic factor (TMOF), a mosquito decapeptide, terminates trypsin biosynthesis in the mosquito gut.
|
|
104340
|
Tumour Morphology Large gene terminator
|
|
Agrobacterium tumefaciens - Agrobacterium
|
|
|
111873
|
Tyrosine suppressor tRNA gene
|
|
Escherichia coli - ECOLX
|
A suppressor tRNA contains a mutation in the anticodon region that leads to its recognition and binding to a stop codon. This leads to the suppression of protein truncation resulting from a nonsense mutation. Therefore the suppressor tRNA will bind and incorporate its amino acid, instead of the regular release factor binding and causing termination, allowing translation to continue. ...
|
|
115345
|
Ubiquitin
|
|
Drosophila melanogaster - Common Fruit Fly
|
Ubiquitin is a small protein of 76 amino acids, which is highly conserved in eukaryotes and may have many roles within the cell. Covalent attachment of ubiquitin can mark a protein for proteasomal degradation.
|
|
116050
|
Ubiquitin 14 terminator
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
115655
|
Ubiquitin 4-2 intron
|
|
Petroselinum crispum - Parsley
|
|
|
115654
|
Ubiquitin 4-2 promoter
|
|
Petroselinum crispum - Parsley
|
|
|
103927
|
Ubiquitin 5' Untranslated Region
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
104873
|
Ubiquitin 7 gene Promoter
|
|
Oryza sativa - Rice, ORYSA
|
|
|
101874
|
Ubiquitin gene 3 promoter
|
|
Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
|
|
|
100362
|
Ubiquitin gene promoter
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
111526
|
Ubiquitin gene promoter
|
|
Andropogon gerardii - Big bluestem, Turkeyfoot, Tall bluestem, Bluejoint, ANGER
|
|
|
101941
|
Ubiquitin gene promoter
|
|
Saccharum sp. - Sugar cane
|
|
|
110612
|
Ubiquitin gene terminator
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
103627
|
Ubiquitin Intron 1
|
|
Zea mays - Maize, Corn, MAIZE
|
|
|
111528
|
Ubiquitin Intron Sequence
|
|
Andropogon gerardii - Big bluestem, Turkeyfoot, Tall bluestem, Bluejoint, ANGER
|
|
|
111527
|
Ubiquitin leader sequence
|
|
Andropogon gerardii - Big bluestem, Turkeyfoot, Tall bluestem, Bluejoint, ANGER
|
|
|
115843
|
Ubiquitin promoter
|
|
Saccharum ravennae - Plume grass, Ravenna grass, Elephant grass
|
|
|
115845
|
Ubiquitin promoter
|
|
Coix lacryma-jobi - Job's tears, Adlay millet
|
|
|
115847
|
Ubiquitin promoter
|
|
Arundo donax - Giant reed
|
|
|
116047
|
Ubiquitin terminator
|
|
Sorghum bicolor - Sorghum
|
|
|
111059
|
Ubiquitin-ribosomal protein gene promoter
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
111058
|
Ubiquitin-ribosomal protein gene terminator
|
|
Solanum tuberosum - Potato, SOLTU
|
|
|
101523
|
UDP-glucose:sinapate glucosyltransferase
|
Changes in quality and/or metabolite content - Protein and amino acids
|
Brassica napus - Turnip, Rapeseed, Canola Plant, Oilseed Rape, Rape, BRANA
|
As a step in the biosynthesis of sinapine the UDP-glucose:sinapate glucosyltransferase catalyses the conversion of sinapic acid to sinapoyl glucose.
A number of plant components including sinapic acid esters restrict the use of oilseed rape products in human and animal nutrition.
In oilseed rape these compounds are present in much higher concentrations than in other oil-rich seeds, which accounts for the bitter taste and astringency of oilseed rape products. ...
|
|
105173
|
UL32 gene
|
Production of medical or pharmaceutical compounds (human or animal) - Vaccines
|
Gallid alphaherpesvirus 1 - ILTV
|
UL32 is a glycoprotein that plays a role in efficient localization of neo-synthesized capsids to nuclear replication compartments, thereby controlling cleavage and packaging of virus genomic DNA.
|
|
103026
|
Unknown seed protein-promoter
|
|
Vicia faba - Broad Bean, Tick Bean, Windsor Bean, Horse Bean, Pigeon Bean, Field Bean
|
|
|
111569
|
Uridine monophosphate synthase gene
|
Changes in physiology and/or production - Yield
|
Solanum tuberosum - Potato, SOLTU
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The uridine monophosphate synthase of [i]Solanum tuberosum[/i] is a bifunctional enzyme which acts as an orotate phosphoribosyltransferase and an orotidine 5'-monophosphate decarboxylase. These two sites catalyze the last two steps of the de novo uridine monophosphate biosynthetic pathway.
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109064
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Vacuolar invertase gene
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Changes in quality and/or metabolite content - Carbohydrates
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Solanum tuberosum - Potato, SOLTU
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Hydrolyses sucrose in plant vacuoles to form reducing sugars.
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110464
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Vacuolar Membrane Transporter 1 gene
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Changes in quality and/or metabolite content - Pigmentation / Coloration
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Arabidopsis thaliana - Thale cress, Mouse-ear cress, Arabidopsis, ARATH
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Vacuolar iron transporter involved in the transfer of iron from the cytosol to the vacuole for intracellular iron storage. Vacuolar iron storage is required for seed embryo and seedling development.
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110465
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Vacuolar Membrane Transporter 1 gene
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Changes in quality and/or metabolite content - Pigmentation / Coloration
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Tulipa gesneriana - Tulip, Garden Tulip, Didier's tulip, TULGE
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Vacuolar iron transporter involved in the transfer of iron from the cytosol to the vacuole for intracellular iron storage. Vacuolar iron storage is required for seed embryo and seedling development.
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14990
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Vegetative insecticidal protein 3A
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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The vip3A gene codes for a vegetative insecticidal protein which confers tolerance to lepidopteran insect pests such as the cotton bollworm (Helicoverpa zea), tobacco budworm (Heliothis virescens), pink bollworm (Pectinophora gossypiella), fall armyworm (Spodoptera frugiperda), beet armyworm (Spodoptera exigua), soybean looper (Pseudoplusia includens), cabbage looper (Trichoplusia ni), and cotton leaf perforator (Bucculatrix thurberiella).
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100887
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Vegetative insecticidal protein 3Aa20
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Resistance to diseases and pests - Insects - Lepidoptera (butterflies and moths)
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Bacillus thuringiensis - Bt, Bacillus, BACTU
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Vip3A is a group of vegetative insecticidal proteins (i.e., produced during the vegetative stage of bacterial growth) from [i]Bacillus thuringiensis[/i], a gram-positive bacterium commonly found in soil. The Vip3A proteins are highly toxic to some lepidopteran insects. ...
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115068
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Vegetative storage protein terminator
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Glycine max - Soybean, Soya bean, Soya, SOYBN
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105223
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Viral Protein 2 gene
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Production of medical or pharmaceutical compounds (human or animal) - Vaccines
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Infectious bursal disease virus - Gumboro virus
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VP2 is a component of the IBDV viral capsid. It is the major host-protective immunogen of IBDV, and contains the immunogenic regions responsible for the induction of neutralising antibodies.
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102024
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Viral protein 60
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Production of medical or pharmaceutical compounds (human or animal) - Vaccines
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Rabbit hemorrhagic disease virus - RHDV
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The viral capsid protein VP60 is a structural protein of the rabbit haemorrhagic disease virus (RHDV). The VP60 protein alone does not trigger the disease in rabbits.
The vaccines used in this case contain inactivated virus and thus the VP60 protein.
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15024
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WMV-2 coat protein
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Resistance to diseases and pests - Viruses - Mosaic virus - Watermelon mosaic virus-2 (WMV2)
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Watermelon mosaic virus
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The cp gene from WMV-2 encodes the coat protein (CP) gene from Watermelon mosaic virus-2. Through a process related to viral cross-protection, transgenic lines with this gene exhibit resistance to infection and subsequent disease caused by WMV-2.
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106342
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Wound induceable promoter
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Solanum tuberosum - Potato, SOLTU
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103726
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WRKY45
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Resistance to diseases and pests - Bacteria, Fungi
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Oryza sativa - Rice, ORYSA
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The WRKY45 transcription factor is upregulated during the Benzothiadiazole (BTH)-induced disease resistance which sets off a signalling cascade that protects plants from diseases by activating the salicylic acid (SA) signaling pathway
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111594
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Xylanase Z gene
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Use in industrial applications
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Ruminiclostridium thermocellum - CLOTM
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Xylanases hydrolyse the glycosidic bonds between unsubstituted xylose residues, leading to the degradation of xylan, a component of the hemicellulose found in plant cell walls.
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100278
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Zeaxanthin epoxidase gene
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Changes in quality and/or metabolite content - Pigmentation / Coloration
Tolerance to abiotic stress
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Solanum tuberosum - Potato, SOLTU
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The ZEP protein (EC 1.14.13.90) catalyzes the epoxidation of zeaxanthin to violaxanthin. Violaxanthin serves as a precursor molecule for many carotenoids, such as the phytohormone abscisic acid. ...
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115831
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Zein Zc2 promoter
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Zea mays - Maize, Corn, MAIZE
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15025
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ZYMV coat protein
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Resistance to diseases and pests - Viruses - Mosaic virus - Zucchini yellow mosaic virus (ZYMV)
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Zucchini yellow mosaic virus - ZYMV
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The cp gene from ZYMV encodes the coat protein (CP) gene from Zucchini yellow mosaic virus. Through a process related to viral cross-protection, transgenic lines with this gene exhibit resistance to infection and subsequent disease caused by ZYMV.
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104359
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α' subunit of β-conglycinin gene promoter
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Glycine max - Soybean, Soya bean, Soya, SOYBN
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103856
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α' subunit of β-conglycinin gene terminator
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Glycine max - Soybean, Soya bean, Soya, SOYBN
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115354
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δ-cadinene synthase dsRNA
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Gossypium hirsutum - Cotton
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